Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9n16
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.10 |||6-phosphogluconolactonase |Schizosaccharomyces po...   124   1e-29
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy...    28   1.2  
SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit Caf16|Schizos...    27   2.0  
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch...    26   4.7  
SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr 2...    26   4.7  
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha...    26   6.1  

>SPCC16C4.10 |||6-phosphogluconolactonase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 257

 Score =  124 bits (300), Expect = 1e-29
 Identities = 74/209 (35%), Positives = 112/209 (53%), Gaps = 12/209 (5%)
 Frame = +3

Query: 123 DEEEIIRKLSTYIQKISNDAILNRNKFVVGLSGGSVVKYLCEGLPQVE-TDWSKWTLAFC 299
           D   + + L  ++++ S  +I     F + LSGGS+ K L EGL Q    ++SKW + F 
Sbjct: 8   DVSLVAKALGAFVKEKSEASIKRHGVFTLALSGGSLPKVLAEGLAQQRGIEFSKWEVFFA 67

Query: 300 DERVVPEDSSDSTFGIYKKDLIPKTELKESQFI------TIKQGAT-AQETAKDYIEKLR 458
           DER+VP D  +S + + KK +  K E  + + I       +K+     Q  A +Y ++L 
Sbjct: 68  DERIVPLDDENSNYALCKKLIFDKFEGFDPKKIHTINPELLKENPIDPQNVADEYEKQLV 127

Query: 459 KVXXXXXXXXXXXXXXM----GPDGHTCSLFPGHKLLEETEDKVAAITDSPKPPPERITL 626
            V              +    GPDGHTCSLFP H++L+E    VA +TDSPKPP +RITL
Sbjct: 128 HVFANSSTVKVPVFDLLLLGCGPDGHTCSLFPDHEVLQEDVAWVAPVTDSPKPPKDRITL 187

Query: 627 TYPVINGARNCIFAISGAGKSEMAKRILK 713
           T PV+  A+   F  +GAGK ++   +++
Sbjct: 188 TLPVVTHAQAIAFVTTGAGKKDILPIVIE 216


>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 454

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = +3

Query: 255 PQVETDWSKWTLAFCDERVVPEDSSDSTFGIYKKDLIPKTELKESQFITIKQGATAQETA 434
           P+V+     W L + DE+          FG  +K ++PK     + F T +Q     ++A
Sbjct: 284 PEVKKALENWFLCYADEKDPAHQDEVEVFG--RKIIVPKASGNVAWF-TFEQLCGEPKSA 340

Query: 435 KDYI 446
            DY+
Sbjct: 341 ADYL 344


>SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit
           Caf16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 588 TDSPKPPPERITLTYPVINGARNCIFAISGAGKSEMAK 701
           T SPK P     +T  +  G+R  +   +GAGKS + K
Sbjct: 11  TFSPKQPLSLDHVTLDLPKGSRTLLVGANGAGKSTLLK 48


>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 667

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = -3

Query: 700 LAISDFPAPEIAKIQFLAPFITG*VNVILSGGGFGESVIAATLSSVSSSNL*PGNRE 530
           + +   P PE  K+ F+   +     V+ S   F ++VIA    S+ ++NL   NRE
Sbjct: 313 ILLPKLPLPEKNKLHFITQSLQ--TGVMCSFLAFIDTVIAVKAISLQTNNLIRSNRE 367


>SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 304

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +2

Query: 614 ENHINLSSYKWSKELYFCYFWGRE 685
           +NH+++++ +W     FC F GR+
Sbjct: 102 KNHVHMNATRWHTLSEFCKFLGRQ 125


>SPAPJ696.01c |vps17||retromer complex subunit
           Vps17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 549

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 351 KKDLIPKTELKESQFITIKQGATAQETAKDYIEK 452
           K D +    +KES+  T K   + Q+  ++Y+EK
Sbjct: 402 KVDFVTLNLVKESKTYTKKTSVSLQKAIREYVEK 435


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,681,448
Number of Sequences: 5004
Number of extensions: 50120
Number of successful extensions: 161
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)