Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt9n16
(714 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99281-43|CAJ76962.1| 257|Caenorhabditis elegans Hypothetical p... 103 1e-22
Z99281-42|CAB16505.2| 269|Caenorhabditis elegans Hypothetical p... 103 1e-22
Z81113-3|CAB03280.1| 267|Caenorhabditis elegans Hypothetical pr... 31 1.1
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 29 2.5
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 29 2.5
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 29 2.5
Z48621-4|CAA88542.1| 160|Caenorhabditis elegans Hypothetical pr... 29 4.4
>Z99281-43|CAJ76962.1| 257|Caenorhabditis elegans Hypothetical
protein Y57G11C.3b protein.
Length = 257
Score = 103 bits (247), Expect = 1e-22
Identities = 75/205 (36%), Positives = 112/205 (54%), Gaps = 10/205 (4%)
Frame = +3
Query: 123 DEEEIIRKLSTYIQKISNDAILNRNKFV-VGLSGGSVVKYLCEG---LPQVETDWSKWTL 290
DE+E+I +L Y+++ +L++N V +G+SGGS+ + + LPQ + +W + +
Sbjct: 10 DEKELILQLRRYLEE-KLTYLLDQNGTVSIGVSGGSMPRVFSKAILSLPQEQLNWKRIRI 68
Query: 291 AFCDERVVPEDSSDSTFGIYKKDLIPKTELKESQFITIKQGATAQETAKDYIEKLRKVXX 470
DER V DS +S G Y + L P EL++ F+ ++ TA+ Y LRK
Sbjct: 69 FMVDERNVDLDSEESNQGEYLR-LFPN-ELRDV-FVPMQIFKDPCLTAQHYEISLRKYLL 125
Query: 471 XXXXXXXXXXXXM----GPDGHTCSLFPGHKLLEE-TE-DKVAAITDSPKPPPERITLTY 632
+ GPDGHT S+FPG + LE+ TE + V+ ITDSPKPPP RITLT
Sbjct: 126 PEQLNNTARFDILFLGVGPDGHTASIFPGKERLEKITELNWVSVITDSPKPPPSRITLTL 185
Query: 633 PVINGARNCIFAISGAGKSEMAKRI 707
+ A+N F I G K+E+ + I
Sbjct: 186 QTLQHAKNVAFIICGKQKAEIVRGI 210
>Z99281-42|CAB16505.2| 269|Caenorhabditis elegans Hypothetical
protein Y57G11C.3a protein.
Length = 269
Score = 103 bits (247), Expect = 1e-22
Identities = 75/205 (36%), Positives = 112/205 (54%), Gaps = 10/205 (4%)
Frame = +3
Query: 123 DEEEIIRKLSTYIQKISNDAILNRNKFV-VGLSGGSVVKYLCEG---LPQVETDWSKWTL 290
DE+E+I +L Y+++ +L++N V +G+SGGS+ + + LPQ + +W + +
Sbjct: 22 DEKELILQLRRYLEE-KLTYLLDQNGTVSIGVSGGSMPRVFSKAILSLPQEQLNWKRIRI 80
Query: 291 AFCDERVVPEDSSDSTFGIYKKDLIPKTELKESQFITIKQGATAQETAKDYIEKLRKVXX 470
DER V DS +S G Y + L P EL++ F+ ++ TA+ Y LRK
Sbjct: 81 FMVDERNVDLDSEESNQGEYLR-LFPN-ELRDV-FVPMQIFKDPCLTAQHYEISLRKYLL 137
Query: 471 XXXXXXXXXXXXM----GPDGHTCSLFPGHKLLEE-TE-DKVAAITDSPKPPPERITLTY 632
+ GPDGHT S+FPG + LE+ TE + V+ ITDSPKPPP RITLT
Sbjct: 138 PEQLNNTARFDILFLGVGPDGHTASIFPGKERLEKITELNWVSVITDSPKPPPSRITLTL 197
Query: 633 PVINGARNCIFAISGAGKSEMAKRI 707
+ A+N F I G K+E+ + I
Sbjct: 198 QTLQHAKNVAFIICGKQKAEIVRGI 222
>Z81113-3|CAB03280.1| 267|Caenorhabditis elegans Hypothetical
protein T03F6.3 protein.
Length = 267
Score = 30.7 bits (66), Expect = 1.1
Identities = 48/203 (23%), Positives = 77/203 (37%), Gaps = 16/203 (7%)
Frame = +3
Query: 129 EEIIRKLSTYIQKISNDAILNRNKFVVGLSGGS----VVKYLCEGLPQVETDWSKWTLAF 296
+++ + Y+ N+A N V+GL GS + K L E + K
Sbjct: 10 DKVAEFAARYVVTKINEATENGKYLVLGLPTGSTPLGMYKKLIEFYNAGVISFEKVKTFN 69
Query: 297 CDERV-VPEDSSDSTFGIYKKDLIPKTELKESQFITIKQGATAQETAKDYIEKLRKVXXX 473
DE V +P D ++S + ++ + I I G T+ K+ E RK+
Sbjct: 70 MDEYVDLPRDHTESYHSFMFDNFFRHIDINPAN-IHILDGNTSDHE-KECEEYERKIKES 127
Query: 474 XXXXXXXXXXXMGPDGHTCSLFPGHKLLEET------EDKVAAIT-----DSPKPPPERI 620
+GPDGH PG L T ED + A D K P + +
Sbjct: 128 GGIDLFVGG--IGPDGHIAFNEPGSSLASRTRIKTLNEDTIQANARFFGGDITKVPTQAL 185
Query: 621 TLTYPVINGARNCIFAISGAGKS 689
T+ + AR + I+G+ K+
Sbjct: 186 TVGVQTVMDAREVMILITGSHKA 208
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
protein K07E12.1b protein.
Length = 12268
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 192 RNKFVVGLS-GGSVVKYLCEGLPQVETDWSKWTLAFCDERVVPEDSSDS 335
R+ FV S GG +V + LP+ ++WT+ + D+ P+D +S
Sbjct: 1851 RDDFVTSKSDGGQIVLVFNDELPEYLKPPNEWTIQYTDDAEQPKDQWES 1899
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
protein K07E12.1a protein.
Length = 13100
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 192 RNKFVVGLS-GGSVVKYLCEGLPQVETDWSKWTLAFCDERVVPEDSSDS 335
R+ FV S GG +V + LP+ ++WT+ + D+ P+D +S
Sbjct: 1914 RDDFVTSKSDGGQIVLVFNDELPEYLKPPNEWTIQYTDDAEQPKDQWES 1962
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
protein.
Length = 13100
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 192 RNKFVVGLS-GGSVVKYLCEGLPQVETDWSKWTLAFCDERVVPEDSSDS 335
R+ FV S GG +V + LP+ ++WT+ + D+ P+D +S
Sbjct: 1914 RDDFVTSKSDGGQIVLVFNDELPEYLKPPNEWTIQYTDDAEQPKDQWES 1962
>Z48621-4|CAA88542.1| 160|Caenorhabditis elegans Hypothetical
protein R07B1.5 protein.
Length = 160
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +3
Query: 216 SGGSVVKYLCEGLPQVETD 272
SG SV+ Y CE P VETD
Sbjct: 90 SGCSVITYTCERTPNVETD 108
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,797,533
Number of Sequences: 27780
Number of extensions: 283442
Number of successful extensions: 899
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -