Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9n14
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    35   0.012
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    29   0.61 
SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyc...    29   0.81 
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    28   1.1  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    27   3.3  
SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces po...    26   5.7  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    26   5.7  

>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 34.7 bits (76), Expect = 0.012
 Identities = 34/128 (26%), Positives = 53/128 (41%), Gaps = 1/128 (0%)
 Frame = +3

Query: 174 VAKVVAWKFPLQTIIPAIMVIFVGAWSDKYKKRKIC-IVFPFIGEILSNTGLLFATYYFQ 350
           V+KV A    L   +      + G   D Y +R +  I   F+  +L +  LL+ +Y  +
Sbjct: 185 VSKVRAAFGSLAAFLGLFSTAYYGTMGDIYGRRLVLFITVSFL--LLGDLWLLYQSYAPK 242

Query: 351 ELSLTATALIEALPAAFTGSYVIIFMGMYSFMADRTTVESRTFRLGLVTICVTLGTPTGT 530
                   L  A      G    +     SF+AD +  E R + LGL      LGT  G 
Sbjct: 243 HPYFV---LFAAALKGLGGYISTVVASQNSFVADCSKTEFRAWYLGLNFAAYHLGTALGP 299

Query: 531 ALSGILLR 554
           +LSG +++
Sbjct: 300 SLSGFIVQ 307


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 29.1 bits (62), Expect = 0.61
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +3

Query: 99  DDICDRLRLRNTTGLDEEVNNVQSLVAKVVAWKFPLQTII 218
           ++ICD L    +   + +VN+V+ + A++  WK  L + +
Sbjct: 458 NEICDSLYWNPSPSFESQVNSVRRIYARLELWKSDLHSSV 497


>SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 226

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +1

Query: 424 LWACTVSWQTEPRSRAERLGWGLSRYASRWGHRPALPSAA 543
           +W C      + ++ A+ L + LS Y  ++GH P++ +AA
Sbjct: 65  IWCCRSGSAADTQTVADLLKYYLSMYRIQFGHDPSVHTAA 104


>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +3

Query: 300 GEILSNTGLLFATYYFQELSLTATA-LIEALPAAFTGSYVIIFMGMYS 440
           G I+++  L+F  Y   E +L A   L E +   F G Y+++ MG++S
Sbjct: 417 GAIMASVALMFVLY---EKTLGAKKDLDEIVGMVFYGRYIVLLMGLFS 461


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
            subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 81   VNFNYGDDICDRLRLRNTTGLDEEVNNVQSLVAK 182
            V F+YG+D  D  + ++ T  +    N +SL+ K
Sbjct: 1059 VQFHYGEDSLDVTKQKHLTQFEFSAKNYKSLIQK 1092


>SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 141 LDEEVNNVQSLVAKVVAWKFPLQTIIPAIMVIFVG 245
           L E ++     +A++   K PL T+I A++ I +G
Sbjct: 5   LGERISTSVGFLAELFLMKIPLFTVIVALLTIILG 39


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +3

Query: 333 ATYYFQELSLTATALIEALPAAFTGSYVIIFMGMYSFMADRTTVESRTF 479
           ATY+   L  T   L+     +F   + +IF G+ +F A+ T    R F
Sbjct: 307 ATYFAIRLGHTVAFLMFPFMLSFLLVFWVIFEGVCNFSAEITRFADRNF 355


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,762,420
Number of Sequences: 5004
Number of extensions: 56493
Number of successful extensions: 132
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)