Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9n14
         (675 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0094 + 12315923-12316237,12316347-12317504                       29   3.4  
05_07_0291 - 29020032-29020660,29020747-29020817,29021020-290211...    28   7.8  

>09_03_0094 + 12315923-12316237,12316347-12317504
          Length = 490

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = +3

Query: 366 ATALIE-ALPAAFTG-SYVIIFMGMYSFMADRTTVESRTFRLGLVTICVTLGTPTGTALS 539
           AT LI  A+ AA  G    +    +Y+F+AD     SR    G + +   +GT  GT+L 
Sbjct: 100 ATLLIAMAVTAALNGVGLALQIPAIYAFVADSVDGTSRGVAFGWLMVAGKVGTVGGTSL- 158

Query: 540 GILL 551
           G+L+
Sbjct: 159 GLLM 162


>05_07_0291 -
           29020032-29020660,29020747-29020817,29021020-29021194,
           29021451-29021571,29021686-29022036
          Length = 448

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +3

Query: 249 WSDKYKKRKICIVFPFIGEILSNTGLLFATYYFQE 353
           W D ++KR +    P + E++S+T ++ +   FQ+
Sbjct: 170 WWDMWRKRTLPFTRPHLLELISSTDVIISNVVFQD 204


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,742,114
Number of Sequences: 37544
Number of extensions: 364322
Number of successful extensions: 941
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)