Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt9n14
(675 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF125971-1|AAD14769.2| 469|Caenorhabditis elegans Hypothetical ... 54 1e-07
AL032640-5|CAA21644.1| 475|Caenorhabditis elegans Hypothetical ... 40 0.001
U41009-9|AAA82283.1| 131|Caenorhabditis elegans Defective sperm... 31 0.75
U37713-1|AAC47276.1| 131|Caenorhabditis elegans SPE-27 protein. 31 0.75
Z93778-6|CAB07843.2| 554|Caenorhabditis elegans Hypothetical pr... 29 4.0
AY523514-1|AAR98636.1| 554|Caenorhabditis elegans acetylcholine... 29 4.0
AF067943-4|AAC17661.1| 359|Caenorhabditis elegans Hypothetical ... 29 4.0
Z29095-7|CAA82352.2| 319|Caenorhabditis elegans Hypothetical pr... 28 5.3
AL110500-2|CAB60427.2| 281|Caenorhabditis elegans Hypothetical ... 28 7.0
Z81517-5|CAB04212.1| 685|Caenorhabditis elegans Hypothetical pr... 27 9.2
AF003151-11|AAO61426.1| 402|Caenorhabditis elegans Hypothetical... 27 9.2
AF003151-10|AAK18913.2| 477|Caenorhabditis elegans Hypothetical... 27 9.2
>AF125971-1|AAD14769.2| 469|Caenorhabditis elegans Hypothetical
protein Y4C6B.5 protein.
Length = 469
Score = 53.6 bits (123), Expect = 1e-07
Identities = 45/185 (24%), Positives = 88/185 (47%), Gaps = 1/185 (0%)
Frame = +3
Query: 6 LFMYMMCTSISSLAVQSMHLEKACRVNFNYGDDICDRLRLRNTTGLDEEVNNVQSLVAKV 185
LF+YM+ + ++ Q++ EK C + + + C RN + ++ ++Q+ A
Sbjct: 14 LFLYMLGSYLNYPVFQNLIYEKECLIKYQQNETFC-----RNVSAYYDD-KDIQA-AANH 66
Query: 186 VAWKFPLQTIIPAIM-VIFVGAWSDKYKKRKICIVFPFIGEILSNTGLLFATYYFQELSL 362
+ L + P+++ + +GA +D Y KI ++ P+IG IL +F + YF S+
Sbjct: 67 FYFISSLTLLCPSLVTTLLLGAATD-YWSIKIPLIIPYIGCILGTINYVFQS-YFIHTSV 124
Query: 363 TATALIEALPAAFTGSYVIIFMGMYSFMADRTTVESRTFRLGLVTICVTLGTPTGTALSG 542
+ +AL G ++ I ++ + + R++R+ V + LG G ALSG
Sbjct: 125 YFLLISDAL-FGLCGGFIAIISTTLTYGVKTSMLRYRSYRIAGVEGAIGLGGTVGFALSG 183
Query: 543 ILLRA 557
+ A
Sbjct: 184 TIREA 188
>AL032640-5|CAA21644.1| 475|Caenorhabditis elegans Hypothetical
protein Y43F8A.5 protein.
Length = 475
Score = 40.3 bits (90), Expect = 0.001
Identities = 41/182 (22%), Positives = 79/182 (43%), Gaps = 1/182 (0%)
Frame = +3
Query: 6 LFMYMMCTSISSLAVQSMHLEKACRVNFNYGDDICDRLRLRNTTGLDEEVNNVQSLVAKV 185
+F+Y + +S+ QS+ KAC + + + + + T D V+++ S++
Sbjct: 7 IFLYALTSSVFFPVFQSLIFYKAC-ITLSNSTEPEIACKSKETYARDNSVHSMSSVILMA 65
Query: 186 VAWKFPLQTIIPAIMVIFVGAWSDKYKKRKICIVFPFIGEILSNTGLLFATYYFQELSLT 365
+ + + +VG SD K RK+ + PFIG +S+ +L Y LS
Sbjct: 66 SSTGLCVSAFFTSR---WVGHLSD-VKSRKLAFLIPFIGLFISDFTILIQVLY-PRLSPY 120
Query: 366 ATALIEALPAAFTGSYVIIFMGMYSFMAD-RTTVESRTFRLGLVTICVTLGTPTGTALSG 542
+ E + F G Y+ I G +S ++ + R + + ++LG+ G +S
Sbjct: 121 YFIVSEVI-YGFFGGYMSITSGAFSIVSTMHSDQRERAKGIARLEGTISLGSTVGFLISS 179
Query: 543 IL 548
L
Sbjct: 180 QL 181
>U41009-9|AAA82283.1| 131|Caenorhabditis elegans Defective
spermatogenesis protein27 protein.
Length = 131
Score = 31.1 bits (67), Expect = 0.75
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 547 YYVLWVTMECSHCYSSCIFYRSCTD*YVSKM 639
Y +L+ ECS + CI YR+C D V +M
Sbjct: 52 YDILYTCSECSTLFDLCIKYRTCQDGCVPEM 82
>U37713-1|AAC47276.1| 131|Caenorhabditis elegans SPE-27 protein.
Length = 131
Score = 31.1 bits (67), Expect = 0.75
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 547 YYVLWVTMECSHCYSSCIFYRSCTD*YVSKM 639
Y +L+ ECS + CI YR+C D V +M
Sbjct: 52 YDILYTCSECSTLFDLCIKYRTCQDGCVPEM 82
>Z93778-6|CAB07843.2| 554|Caenorhabditis elegans Hypothetical
protein C31H5.3 protein.
Length = 554
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -3
Query: 655 SSIGNTSSRRINPYKNDKKYRTSNNENT 572
++I + SS +INP N+ Y+ +NN+ T
Sbjct: 458 ATINHKSSPQINPINNNNIYKCANNQKT 485
>AY523514-1|AAR98636.1| 554|Caenorhabditis elegans acetylcholine
receptor (63.2 kD)(acr-19) protein.
Length = 554
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -3
Query: 655 SSIGNTSSRRINPYKNDKKYRTSNNENT 572
++I + SS +INP N+ Y+ +NN+ T
Sbjct: 458 ATINHKSSPQINPINNNNIYKCANNQKT 485
>AF067943-4|AAC17661.1| 359|Caenorhabditis elegans Hypothetical
protein F59B1.6 protein.
Length = 359
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/35 (31%), Positives = 24/35 (68%)
Frame = +3
Query: 408 SYVIIFMGMYSFMADRTTVESRTFRLGLVTICVTL 512
S +I+F+ +Y+ ++ + ES+ +++ L+T C TL
Sbjct: 33 STIIVFILLYAIISRKRKKESQIYQIVLITHCFTL 67
>Z29095-7|CAA82352.2| 319|Caenorhabditis elegans Hypothetical
protein R10E11.7 protein.
Length = 319
Score = 28.3 bits (60), Expect = 5.3
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = +2
Query: 494 HDMRHAGDTDRHCPQRHIITCSGLLWSVLIVTRPVFFIVLVRIN 625
+D+R G P RH IT +SV FF VLV IN
Sbjct: 154 YDIRKVGFISECAPDRHQITTFSNYYSVFFPFVAFFFNVLVIIN 197
>AL110500-2|CAB60427.2| 281|Caenorhabditis elegans Hypothetical
protein Y87G2A.2 protein.
Length = 281
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 8 FYVHDVHVYFKSGGTKYAP 64
FYVH VH YF GG + P
Sbjct: 50 FYVHAVHCYFIRGGEESIP 68
>Z81517-5|CAB04212.1| 685|Caenorhabditis elegans Hypothetical
protein F28B1.5 protein.
Length = 685
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -1
Query: 438 CTCP*I*SHSFQ*TPRVTLQSALSPSTTALGN-NTWR 331
C P + F T R+ +Q + SP+TTAL N + W+
Sbjct: 632 CVIPEAENPKFDFTDRIDVQCSPSPATTALNNISDWQ 668
>AF003151-11|AAO61426.1| 402|Caenorhabditis elegans Hypothetical
protein D1007.5b protein.
Length = 402
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = +1
Query: 1 PAFLCT*CARLFQVWRYKVCTWKRLAESILITATIS 108
P FL C L WR VC WK + E + ATIS
Sbjct: 89 PYFLS--CVGLLLGWRVTVCFWKTITE---VIATIS 119
>AF003151-10|AAK18913.2| 477|Caenorhabditis elegans Hypothetical
protein D1007.5a protein.
Length = 477
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = +1
Query: 1 PAFLCT*CARLFQVWRYKVCTWKRLAESILITATIS 108
P FL C L WR VC WK + E + ATIS
Sbjct: 89 PYFLS--CVGLLLGWRVTVCFWKTITE---VIATIS 119
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,313,903
Number of Sequences: 27780
Number of extensions: 320187
Number of successful extensions: 877
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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