Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9n13
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    29   0.68 
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    29   0.89 
SPCC1281.02c |spf30||splicing factor Spf30 |Schizosaccharomyces ...    27   2.7  
SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa...    27   3.6  
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    26   6.3  
SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual     26   6.3  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    25   8.3  
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo...    25   8.3  
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos...    25   8.3  

>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = -2

Query: 437 VPAK*RQTGLQSLSGHFVGSSAWKCAFCAIS-GTIPGRCFSRGLVKYPSRSLPS 279
           +PA+ R   L  LS HF+ S + + +   I   T  G+C+   LVK P ++ P+
Sbjct: 53  LPARTRSVAL--LSSHFLQSESGRHSIANILIATENGKCYLLQLVKTPEKAFPT 104


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 708 PPIESPVTPSGPSPFLSHQWNSTKDSKIKQP 616
           PP+ S ++PS P   L+H  +ST  + + QP
Sbjct: 747 PPVRSSISPSMPPAPLTHANSSTPMNYVSQP 777


>SPCC1281.02c |spf30||splicing factor Spf30 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 311

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = -1

Query: 705 PIESPVTPSGPSPFLSHQWNSTKDSKIKQPPITNISETLWR 583
           P  SP+ PS P P  S  ++  +  ++K       S+  W+
Sbjct: 210 PKISPIPPSNPPPVPSVSYSQKQQKQLKPKAALEASQNSWK 250


>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 589

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 466 IKLKLINDHQFLLNEDKLVYNLCQATLLVAV 374
           +KL  I    F+  +DKL  NLC+   LVA+
Sbjct: 116 VKLDPIRYQSFIALQDKLHANLCRNRTLVAI 146


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -2

Query: 398 SGHFVGSSAWKCAFCAISGTIPGRCFSRGLVKYPSRSLPSATFCS 264
           +G+    S +   F A +G + G   S G +K PSRS+P  T  S
Sbjct: 287 TGYESFKSTFGVFFPATAGLLAGASMS-GDLKAPSRSIPKGTISS 330


>SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -2

Query: 176 RKFSGLPQPFVKNFVNRILRYTASN 102
           R F GLP+ F  +  N +LR+T+++
Sbjct: 231 RNFMGLPREFFTDTGNYVLRFTSTS 255


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 610 HKYIRDIVERRTDLINRFTKS 548
           H Y  D++ +RTD++N F +S
Sbjct: 828 HGYGNDVLVQRTDVVNNFGES 848


>SPBC8D2.05c |sfi1||spindle pole body protein
           Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 840

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 100 KLDAVYRSILLTKFFTKGWGKPENLR 177
           K DAVYR+ ++ K+F +   K  N++
Sbjct: 193 KADAVYRAFIMLKYFPRWVQKLRNIQ 218


>SPBC725.07 |pex5||peroxisomal targeting signal receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 218 SSRFDTTFLNSNNLRKFSGLPQPFVKNF 135
           +S F   FLNS+   +F  L QP  ++F
Sbjct: 113 TSEFSEVFLNSSENDRFRNLNQPLKQSF 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,231,952
Number of Sequences: 5004
Number of extensions: 72463
Number of successful extensions: 224
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)