Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9n13
         (726 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0711 - 5324079-5324141,5324900-5324962,5325329-5325642,532...    64   1e-10
08_01_0461 - 4063614-4064375,4064439-4066017,4066041-4066086,406...    29   3.8  
02_01_0599 - 4455151-4455915,4455999-4456098,4456176-4456222,445...    29   3.8  
04_03_0333 + 14569377-14569401,14569493-14569588,14569689-14570953     28   6.6  
01_01_1211 + 9753518-9753894,9754265-9754313,9754747-9754773           28   6.6  
08_02_0058 + 11773402-11773482,11773513-11774197,11774245-11774714     28   8.7  
08_01_0781 + 7570485-7570796,7570808-7570885,7570963-7571562           28   8.7  

>02_01_0711 -
           5324079-5324141,5324900-5324962,5325329-5325642,
           5326076-5326245,5326347-5326431,5326775-5327015
          Length = 311

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 35/87 (40%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
 Frame = +2

Query: 467 WRRRNLMVKPLLKEAGIGGIILENPFYGLRKPIDQIRSSLHNVSDIFVMGGCLILESLVL 646
           + RR  +  PLLK+  I  ++LE+P+YG R+P  Q  S L  VSD+ ++G   I E+  L
Sbjct: 87  FERRLRLGGPLLKD-NIATMVLESPYYGQRRPSMQHGSKLQCVSDLLLLGKATIDEARSL 145

Query: 647 FHWCERN-GLGPLGVTGLSMGGHMASL 724
            +W +   G G +G+ GLSMGG  A++
Sbjct: 146 LYWLQNEAGYGKMGICGLSMGGVHAAM 172



 Score = 29.1 bits (62), Expect = 3.8
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +1

Query: 289 LLEGYFTSPLEKHLPGIVPEIAQKAHFQALLPTKWPDKDCKPVC-LHLAGTGDH 447
           L EG F +  +  L   +P  +  A    L P     +  K  C +HLAGTGDH
Sbjct: 34  LREGVFRTTCDPRLIEALPPESHNARVAFLTPKSVSPE--KMACVIHLAGTGDH 85


>08_01_0461 -
           4063614-4064375,4064439-4066017,4066041-4066086,
           4066416-4066933,4067435-4067694,4068089-4068594,
           4068667-4071319
          Length = 2107

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 18/44 (40%), Positives = 26/44 (59%)
 Frame = -2

Query: 170 FSGLPQPFVKNFVNRILRYTASNLLADILYVILIENKIVFKLKL 39
           FSG  +PF ++ +NRILR   SN L D L   + +  ++F L L
Sbjct: 389 FSGDYEPFSRDVINRILRIIWSN-LEDPLSQTVKQVHLIFDLLL 431


>02_01_0599 -
           4455151-4455915,4455999-4456098,4456176-4456222,
           4456566-4456612,4457299-4457461,4458013-4458042
          Length = 383

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 7/56 (12%)
 Frame = +1

Query: 94  ASKLDAVYRSILLTKFFTKGWGKPENLRR-------LFEFRKVVSNREECFKLVER 240
           A+ ++AV   I++ +   K W K EN+RR       LF F K++  R++   L+E+
Sbjct: 317 AAHIEAVTEKIIMEEEKWKKW-KTENIRRKHNYVPFLFNFLKILEERQQLKPLIEK 371


>04_03_0333 + 14569377-14569401,14569493-14569588,14569689-14570953
          Length = 461

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 625 DLGVFGAIPLVREEWARSTWCYGAFYGWTYGVS 723
           DL     +P+ +E  A    C G+F+GW  GV+
Sbjct: 125 DLMPVRCVPVPKEVAADDLRCVGSFHGWLVGVT 157


>01_01_1211 + 9753518-9753894,9754265-9754313,9754747-9754773
          Length = 150

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 17/32 (53%), Positives = 19/32 (59%)
 Frame = -2

Query: 353 AISGTIPGRCFSRGLVKYPSRSLPSATFCSLV 258
           A SG+  GRCFSR   + PS  LP   F SLV
Sbjct: 94  AASGSSYGRCFSR--PQPPSMKLPVILFFSLV 123


>08_02_0058 + 11773402-11773482,11773513-11774197,11774245-11774714
          Length = 411

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
 Frame = +1

Query: 607 CDGRLLDLGVFGAIPLVREEWAR----STWCYGAFYGWTYGVSS 726
           C G  + +GV G +PL   E       S  C G+F GW  GV +
Sbjct: 107 CAGETI-MGVRGRVPLPEREREMAAGGSVCCVGSFEGWLVGVKA 149


>08_01_0781 + 7570485-7570796,7570808-7570885,7570963-7571562
          Length = 329

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 169 NLRRLFEFRKVVSNREECFKLVERDYPVTITKEQNVAEGKLL 294
           N   L  F K VS  + C++ +ER +P  I  ++ V E + L
Sbjct: 96  NANSLEHFGKEVSKFQGCYEQIERRHPSGIPHQELVLEAEAL 137


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,918,338
Number of Sequences: 37544
Number of extensions: 435911
Number of successful extensions: 1195
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1194
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)