Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9n13
         (726 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    24   1.3  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    24   1.7  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   5.1  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   5.1  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   9.0  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   9.0  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 592 CLGYICDGRLLDLGVFGAIPLVREE 666
           C G +C G ++ L + G  P  +EE
Sbjct: 40  CSGQVCLGSVMQLPIHGTEPRSKEE 64


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +1

Query: 211 REECFKLVERD-YPVTITKEQNVAEGKLLEGYFTSPLEK 324
           RE+   ++E D +P+T+   +N  E K  +   T P E+
Sbjct: 519 REQKNLMIELDKFPITLQPGKNTIEQKSTKSSVTIPFER 557


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -2

Query: 242 SLSTNLKHSSRFDTTFLNSNNLRKFSGLPQPFVKNFVNRI 123
           SLS N K+S+  +    N+NN   ++   + + KN++  I
Sbjct: 317 SLSNNYKYSNYNNYNNYNNNNYNNYN--KKLYYKNYIINI 354


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 662 SRTSGIAPKTPRSSSLPSQIYP 597
           S+    AP+   S++LPS +YP
Sbjct: 241 SQQQQAAPQGAASANLPSPLYP 262


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 566 DQIRSSLHNVSDIFVMGGCLI 628
           D + SSL+ +S+    GGCL+
Sbjct: 88  DGVPSSLNVISEKIGNGGCLL 108


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 683 QVDLAHSSRTSGIAPKTPRSSSLP 612
           QVD+A S +   ++ K+P  S  P
Sbjct: 865 QVDIADSQQPLNLSKKSPSPSPRP 888


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,792
Number of Sequences: 438
Number of extensions: 4707
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)