Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9n06
         (420 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021497-12|CAA16402.2| 1222|Caenorhabditis elegans Hypothetical...    29   1.0  
Z66565-5|CAA91482.2|  766|Caenorhabditis elegans Hypothetical pr...    29   1.8  
AL132858-15|CAB60482.3|  300|Caenorhabditis elegans Hypothetical...    25   3.9  
Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical pr...    27   7.2  
AF016430-11|AAB65375.1|  387|Caenorhabditis elegans Hypothetical...    27   7.2  
Z71186-7|CAM35835.1|  552|Caenorhabditis elegans Hypothetical pr...    26   9.5  
AC006618-3|AAK68251.3|  960|Caenorhabditis elegans Patched relat...    26   9.5  

>AL021497-12|CAA16402.2| 1222|Caenorhabditis elegans Hypothetical
            protein Y51A2D.15 protein.
          Length = 1222

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = +2

Query: 116  QNTSSLEHLYNDFDQWISDYNDIHNIQSALQKHRQKENTQFT---TTVENKR 262
            QN   L+   +D DQ+  +  D  +  SAL++H++K   +      T+ENK+
Sbjct: 1043 QNKELLQRALHDKDQYHLEMKDFQDQLSALRRHKEKLEDKIMDQYRTMENKK 1094


>Z66565-5|CAA91482.2|  766|Caenorhabditis elegans Hypothetical
           protein T04F8.6 protein.
          Length = 766

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = +2

Query: 173 YNDIHNIQSALQKHRQKENTQFTTTVENKRLQIILNNDIALILYRTKNRNHINTDGLFNG 352
           Y +IHNIQS     R  E+   T   EN R  ++      ++     N  ++++D L   
Sbjct: 502 YENIHNIQSG--SSRINEDGNLTVFSENSRKSLLSPRSRGMLTSLNDNDQNLSSDRLLIN 559

Query: 353 RS 358
           R+
Sbjct: 560 RA 561


>AL132858-15|CAB60482.3|  300|Caenorhabditis elegans Hypothetical
           protein Y113G7A.10 protein.
          Length = 300

 Score = 24.6 bits (51), Expect(2) = 3.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 258 LFSTVVVNCVFSFCLCFC 205
           LF+ +   C +SFC+ FC
Sbjct: 147 LFNRLKAVCKYSFCIVFC 164



 Score = 21.4 bits (43), Expect(2) = 3.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 141 KCSRLLVFCFFSTVMFT 91
           K S  +VFC F T+++T
Sbjct: 156 KYSFCIVFCVFITILWT 172


>Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical protein
            T28C6.9 protein.
          Length = 1861

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = +2

Query: 143  YNDFDQWISDYNDIHNIQSALQ---KHRQKENTQFTTTVENKRLQII 274
            +ND D W  + N+I  ++ AL+    +R     +    V N R Q+I
Sbjct: 1604 WNDDDAWNKNENEIEEVKKALEIEISNRNDTIVKLQNLVSNLRQQLI 1650


>AF016430-11|AAB65375.1|  387|Caenorhabditis elegans Hypothetical
           protein C05C8.8 protein.
          Length = 387

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
 Frame = -1

Query: 138 CSRLLVFCFFSTVMFTYDKFTLNIKIKSNQTIKT-----KTADCI 19
           C RL++FCF   ++F      +N+  ++N +        K  DC+
Sbjct: 12  CLRLIIFCFGLGIIFNQISLLINVFKEANHSFSIHLYSHKNKDCV 56


>Z71186-7|CAM35835.1|  552|Caenorhabditis elegans Hypothetical
           protein F23D12.10 protein.
          Length = 552

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +2

Query: 95  NMTVEKKQNTSSLEHLYNDFDQWISDYNDIHNIQSALQKHRQKE 226
           N T    +NT  +    N+    ISD N I  +Q+ + KH++++
Sbjct: 239 NNTESNLKNTEKIATSINEMMDMISDDNYIPMLQNNVAKHQKRK 282


>AC006618-3|AAK68251.3|  960|Caenorhabditis elegans Patched related
           family protein 4 protein.
          Length = 960

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +2

Query: 161 WISDYNDIHNIQSALQKHRQKENTQFTTTVENKRLQIILNNDIAL 295
           W  +Y        A   +RQK N  + +  EN  LQ I +ND A+
Sbjct: 287 WFVNYPATAENNRAYYAYRQKLNEYWESISENIDLQFIPHNDKAM 331


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,648,528
Number of Sequences: 27780
Number of extensions: 125766
Number of successful extensions: 465
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)