Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt9n05
(769 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0039 - 20423829-20424308,20424664-20424729,20425969-204261... 34 0.11
08_02_1479 + 27390852-27391059,27392017-27392138,27392227-273923... 33 0.19
02_05_0107 + 25897487-25898059 32 0.44
10_01_0355 + 3912019-3913046,3914354-3914678 32 0.58
06_03_0121 + 16864735-16865619,16865706-16866026 29 4.1
12_01_0631 - 5234452-5234468,5234536-5234839,5234926-5235810 29 5.4
09_04_0254 + 16131779-16132475,16132609-16132768,16132944-161329... 29 5.4
08_01_0831 + 8086470-8087354,8087441-8087730,8096373-8096412,809... 29 5.4
06_03_0573 + 22407489-22408373,22408460-22408795 29 5.4
03_03_0153 - 14910420-14910769,14910946-14911008,14911084-149113... 29 5.4
07_01_1077 - 9687394-9687515,9696615-9696733,9696815-9697104,969... 28 7.1
07_01_0697 + 5265079-5266281 28 7.1
04_01_0291 + 3848091-3848975,3849062-3849351,3858003-3858339 28 7.1
03_04_0145 + 17683681-17683982,17686058-17686145 28 7.1
07_03_0146 + 14389350-14390372 28 9.4
>09_06_0039 -
20423829-20424308,20424664-20424729,20425969-20426104,
20426222-20426415
Length = 291
Score = 34.3 bits (75), Expect = 0.11
Identities = 25/80 (31%), Positives = 39/80 (48%)
Frame = +3
Query: 528 GIGPDGHIAFNEPGSSLVSRTRVKTLAYDTLDANKRFFDNDISKVPRQALTVGVGTVMDA 707
G+GPDGHIA PG LV+ + K + Y D K P + +T + +
Sbjct: 186 GMGPDGHIASLFPGHPLVNENK-KWVTY----------IKDSPKPPPERITFTFPVINSS 234
Query: 708 KEVMILITGVHKSLALAKAV 767
V +++TG K+ A+ KA+
Sbjct: 235 AYVAMVVTGAGKAGAVQKAL 254
>08_02_1479 +
27390852-27391059,27392017-27392138,27392227-27392350,
27392641-27392702,27392778-27392859,27393338-27393410,
27397092-27397227,27397337-27397386,27397542-27397590,
27398352-27398831
Length = 461
Score = 33.5 bits (73), Expect = 0.19
Identities = 24/83 (28%), Positives = 41/83 (49%)
Frame = +3
Query: 516 LFIGGIGPDGHIAFNEPGSSLVSRTRVKTLAYDTLDANKRFFDNDISKVPRQALTVGVGT 695
L + G+GPDGH+A PG +V+ +K ++Y D K P + +T
Sbjct: 352 LMLLGMGPDGHVASLFPGHPVVNE-NLKWVSY----------IKDSPKPPPERITFTFPL 400
Query: 696 VMDAKEVMILITGVHKSLALAKA 764
V + + +++TG K+ A+ KA
Sbjct: 401 VNSSAHIALVVTGAGKAGAVHKA 423
>02_05_0107 + 25897487-25898059
Length = 190
Score = 32.3 bits (70), Expect = 0.44
Identities = 29/81 (35%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Frame = +2
Query: 497 GGWRSAFVHRRYRSGRSH-RVQ--------RTGLLAGVSDASEDPGLRHPGRQQAVL*QR 649
G WR A HRR R GR + R+Q R+ LLA S + P P +QQ V+
Sbjct: 17 GLWRWALCHRRRRRGRGYLRLQPCPGAAGGRSPLLAAGSVKKQPP----PPQQQIVV--- 69
Query: 650 HQQGAPTGAHRWSRNCYGR*R 712
HQ+G +W R+ R R
Sbjct: 70 HQRGGEKAVLKWGRSLARRMR 90
>10_01_0355 + 3912019-3913046,3914354-3914678
Length = 450
Score = 31.9 bits (69), Expect = 0.58
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = -1
Query: 526 PMNKCTPPASCMSFSKR*HSSTKSDALPSSTCALLGSMSMCLKNSFH 386
P+N P +SF ++ +S A PS+TC+LLG + L S H
Sbjct: 58 PINPTAGPGPSLSFYSLSSAALRSVAAPSATCSLLGHTNSHLLFSDH 104
>06_03_0121 + 16864735-16865619,16865706-16866026
Length = 401
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 170 QIRSPADHAVRSGSGKTLRAGPAHRWDAP 256
Q RSP H V+ G G T+R+ P + P
Sbjct: 308 QRRSPRQHTVQGGGGPTIRSDPQPQTSKP 336
>12_01_0631 - 5234452-5234468,5234536-5234839,5234926-5235810
Length = 401
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 170 QIRSPADHAVRSGSGKTLRAGPAHRWDAP 256
Q RSP H V+ G G T+R+ P + P
Sbjct: 308 QRRSPRQHTVQGGGGPTIRSDPQPQTSNP 336
>09_04_0254 +
16131779-16132475,16132609-16132768,16132944-16132992,
16133158-16133271,16133434-16133958,16135538-16135969,
16138882-16138956,16139530-16139625,16140610-16140725,
16140822-16140992,16141080-16141239,16141328-16141513,
16141624-16141752,16141837-16141915,16142034-16142143
Length = 1032
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -3
Query: 590 RPRHQRGARFVERDVTVRTDTSDEQMHSASLLYEFLKA 477
R H+R A ++ D T TDTSD + ++ + EF A
Sbjct: 13 RSGHRRIADYLADDQTTNTDTSDNESYTTAYGDEFFAA 50
>08_01_0831 +
8086470-8087354,8087441-8087730,8096373-8096412,
8096878-8096957,8099643-8099733,8099989-8100052,
8100553-8100818
Length = 571
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 170 QIRSPADHAVRSGSGKTLRAGPAHRWDAP 256
Q RSP H V+ G G T+R+ P + P
Sbjct: 308 QRRSPRQHTVQGGGGPTIRSDPQPQTSNP 336
>06_03_0573 + 22407489-22408373,22408460-22408795
Length = 406
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 170 QIRSPADHAVRSGSGKTLRAGPAHRWDAP 256
Q RSP H V+ G G T+R+ P + P
Sbjct: 308 QRRSPRQHTVQGGGGPTIRSDPQPQTSNP 336
>03_03_0153 -
14910420-14910769,14910946-14911008,14911084-14911339,
14911432-14911522,14911798-14912096,14912177-14912295,
14922536-14922594,14922676-14922965,14923052-14923567,
14923634-14923936
Length = 781
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 170 QIRSPADHAVRSGSGKTLRAGPAHRWDAP 256
Q RSP H V+ G G T+R+ P + P
Sbjct: 286 QRRSPRQHTVQGGGGPTIRSDPQPQTSNP 314
>07_01_1077 -
9687394-9687515,9696615-9696733,9696815-9697104,
9697191-9698075
Length = 471
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 170 QIRSPADHAVRSGSGKTLRAGP 235
Q RSP H V+ G G T+R+ P
Sbjct: 308 QRRSPRQHTVQGGGGPTIRSDP 329
>07_01_0697 + 5265079-5266281
Length = 400
Score = 28.3 bits (60), Expect = 7.1
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +2
Query: 683 WSRNCYGR*RGHDPHNRSAQVLGACQGCG 769
W+R C G R HDP + + + + CG
Sbjct: 352 WARGCEGAVRLHDPRTGACEEVAQVEKCG 380
>04_01_0291 + 3848091-3848975,3849062-3849351,3858003-3858339
Length = 503
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 170 QIRSPADHAVRSGSGKTLRAGP 235
Q RSP H V+ G G T+R+ P
Sbjct: 308 QRRSPRQHTVQGGGGPTIRSDP 329
>03_04_0145 + 17683681-17683982,17686058-17686145
Length = 129
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = -3
Query: 242 GGQAQHEVSSRTRSELRDPLENESGGPVGNDAG 144
GG+ V SR RSE+RD + +++ GP DAG
Sbjct: 42 GGEQSGGVWSR-RSEMRDVVGSDAMGPAERDAG 73
>07_03_0146 + 14389350-14390372
Length = 340
Score = 27.9 bits (59), Expect = 9.4
Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 11/90 (12%)
Frame = -1
Query: 340 YSSMLKVVTYLKDNFPSLWNSINRLYMP-------RGVPPVGRPSTKCLPGPG---ANCV 191
YSS + V++ + P+ +N NR Y P + P +P P P V
Sbjct: 177 YSSPVNTVSHTTPHIPNAYNDSNRRYSPDTRYGQYNNIAPQTQPIRPPSPPPDPPRPETV 236
Query: 190 IRWRTNLAAQSATMLAS-SRIIRRIVRDYF 104
W N+ ++ L + SR R+ DY+
Sbjct: 237 ENWFRNIIRENLAKLRNRSRDYRKPYPDYY 266
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,520,241
Number of Sequences: 37544
Number of extensions: 527302
Number of successful extensions: 1647
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1646
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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