Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt9m21
(601 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 98 1e-21
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 79 6e-16
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 71 1e-13
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 70 2e-13
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 70 3e-13
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 70 3e-13
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 66 3e-12
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 66 5e-12
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 66 5e-12
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 65 9e-12
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 61 1e-10
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 60 2e-10
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 59 4e-10
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 56 3e-09
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 55 7e-09
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 52 5e-08
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 50 2e-07
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 48 8e-07
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 37 0.002
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom... 29 0.39
SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr 2... 29 0.39
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 29 0.52
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M... 29 0.52
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 28 1.2
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 97.9 bits (233), Expect = 1e-21
Identities = 45/119 (37%), Positives = 72/119 (60%)
Frame = +1
Query: 235 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISSNKTICTLQITDTTGSH 414
+Y++VV G GGVGKS+L ++ ++ F + Y PTIED+YR+ + L + DT G
Sbjct: 8 EYKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKKCEIDGEGALLDVLDTAGQE 67
Query: 415 QFPAMQRLSISKGHAFILVYSVSSRQSLEELKPIWQTIKEIKGVELPNIPVMLAGNKCD 591
++ AM+ + G F+LVY+++SR S +E+ +Q I +K + PV+L NKCD
Sbjct: 68 EYSAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQILRVK--DKDTFPVVLVANKCD 124
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 78.6 bits (185), Expect = 6e-16
Identities = 41/117 (35%), Positives = 65/117 (55%)
Frame = +1
Query: 241 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISSNKTICTLQITDTTGSHQF 420
R+ V G+ VGKSSL +++V+ F ESY PTIE+T+ + I +I DT G ++
Sbjct: 8 RIAVLGSRSVGKSSLTVQYVENHFVESYYPTIENTFSKNIKYKGQEFATEIIDTAGQDEY 67
Query: 421 PAMQRLSISKGHAFILVYSVSSRQSLEELKPIWQTIKEIKGVELPNIPVMLAGNKCD 591
+ H ++LVYS++S+ S E +K + I G E +P+++ GNK D
Sbjct: 68 SILNSKHSIGIHGYVLVYSITSKSSFEMVKIVRDKILNHTGTEW--VPIVVVGNKSD 122
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 70.9 bits (166), Expect = 1e-13
Identities = 38/117 (32%), Positives = 61/117 (52%)
Frame = +1
Query: 241 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISSNKTICTLQITDTTGSHQF 420
++V+ G G GK+SL+ F KG F + Y PTI + Y I + L + DT G ++
Sbjct: 15 KIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHDIFVDGNSIELSLWDTAGQEEY 74
Query: 421 PAMQRLSISKGHAFILVYSVSSRQSLEELKPIWQTIKEIKGVELPNIPVMLAGNKCD 591
++ LS S H ++ ++V SR SLE + W + E+ P + ++L KCD
Sbjct: 75 DQLRSLSYSDTHVIMICFAVDSRDSLENVITKW--LPEVSS-NCPGVKLVLVALKCD 128
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 70.1 bits (164), Expect = 2e-13
Identities = 36/117 (30%), Positives = 63/117 (53%)
Frame = +1
Query: 241 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISSNKTICTLQITDTTGSHQF 420
++V+ G G GK+ L++ F KGTF E Y+PT+ + Y + + L + DT G +
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHIELALWDTAGQEDY 67
Query: 421 PAMQRLSISKGHAFILVYSVSSRQSLEELKPIWQTIKEIKGVELPNIPVMLAGNKCD 591
++ LS H ++ +SV + +SL+ ++ W I E+ N+P++L G K D
Sbjct: 68 DRLRPLSYPDSHVVLICFSVDAPESLDNVQEKW--ISEVLHF-CSNLPILLVGCKVD 121
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 69.7 bits (163), Expect = 3e-13
Identities = 44/126 (34%), Positives = 64/126 (50%), Gaps = 2/126 (1%)
Frame = +1
Query: 220 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISSNKTICTLQI 393
PE +++++ G GVGKS L+LRF T+ ESYI TI + R KT+ LQI
Sbjct: 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTV-KLQI 61
Query: 394 TDTTGSHQFPAMQRLSISKGHAFILVYSVSSRQSLEELKPIWQTIKEIKGVELPNIPVML 573
DT G +F + H I+VY V+ + S +K Q ++EI + + +L
Sbjct: 62 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVK---QWLQEIDRYAVEGVNRLL 118
Query: 574 AGNKCD 591
GNK D
Sbjct: 119 VGNKSD 124
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 69.7 bits (163), Expect = 3e-13
Identities = 37/117 (31%), Positives = 62/117 (52%)
Frame = +1
Query: 241 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISSNKTICTLQITDTTGSHQF 420
++VV G G GK+SL+ F G F Y+PT+ + Y + L + DT G ++
Sbjct: 10 KLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSDCRVDGKSVQLALWDTAGQEEY 69
Query: 421 PAMQRLSISKGHAFILVYSVSSRQSLEELKPIWQTIKEIKGVELPNIPVMLAGNKCD 591
++ +S +K H ++ +++ S SLE + W I+EI + PN+P +L G K D
Sbjct: 70 ERLRPMSYAKAHIILVGFAIDSPDSLENVSTKW--IEEINTL-CPNVPFILVGMKAD 123
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 66.5 bits (155), Expect = 3e-12
Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 2/119 (1%)
Frame = +1
Query: 241 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVIS--SNKTICTLQITDTTGSH 414
++VV G GG GK+ L++ F GTF E Y+PT+ + Y I+ N + L + DT G
Sbjct: 16 KLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYITDITYGPNSKVIELALWDTAGQE 75
Query: 415 QFPAMQRLSISKGHAFILVYSVSSRQSLEELKPIWQTIKEIKGVELPNIPVMLAGNKCD 591
++ ++ LS + +L +S+ SL + W E++ P P++L G K D
Sbjct: 76 EYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKW--YPEVQHF-CPRTPIVLVGLKAD 131
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 65.7 bits (153), Expect = 5e-12
Identities = 34/117 (29%), Positives = 61/117 (52%)
Frame = +1
Query: 241 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISSNKTICTLQITDTTGSHQF 420
++V+ G G GK+ L++ F KGTF E Y+PT+ + Y + + L + DT G +
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHVELALWDTAGQEDY 67
Query: 421 PAMQRLSISKGHAFILVYSVSSRQSLEELKPIWQTIKEIKGVELPNIPVMLAGNKCD 591
++ LS H ++ ++V S SL+ ++ W I E+ ++P++L K D
Sbjct: 68 DRLRPLSYPDSHVILICFAVDSPDSLDNVQEKW--ISEVLHF-CSSLPILLVACKAD 121
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 65.7 bits (153), Expect = 5e-12
Identities = 34/117 (29%), Positives = 57/117 (48%)
Frame = +1
Query: 241 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISSNKTICTLQITDTTGSHQF 420
+ VV G G VGK+ L++ + F Y+PT+ D Y + TL + DT G +
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSDYVPTVFDNYAVTVMIGDEPYTLGLFDTAGQEDY 64
Query: 421 PAMQRLSISKGHAFILVYSVSSRQSLEELKPIWQTIKEIKGVELPNIPVMLAGNKCD 591
++ LS + F++ +SV+S S E +K W E+ P +P ++ G + D
Sbjct: 65 DRLRPLSYPQTDVFLVCFSVTSPASFENVKEKW--FPEVHH-HCPGVPCLIVGTQID 118
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 64.9 bits (151), Expect = 9e-12
Identities = 45/120 (37%), Positives = 64/120 (53%), Gaps = 3/120 (2%)
Frame = +1
Query: 241 RVVVFGAGGVGKSSLVLRFVKGTF---RESYIPTIEDTYRQVISSNKTICTLQITDTTGS 411
++V+ G VGKSSLVLRFVK F RES I T I N ++ L+I DT G
Sbjct: 16 KLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSV-KLEIWDTAGQ 74
Query: 412 HQFPAMQRLSISKGHAFILVYSVSSRQSLEELKPIWQTIKEIKGVELPNIPVMLAGNKCD 591
++ ++ + + I+VY ++ SLE+ K W IKE++ I + LAGNK D
Sbjct: 75 ERYKSLAPMYYRNANCAIVVYDITQAASLEKAKS-W--IKELQRQAPEGIVIALAGNKLD 131
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 61.3 bits (142), Expect = 1e-10
Identities = 38/128 (29%), Positives = 67/128 (52%), Gaps = 3/128 (2%)
Frame = +1
Query: 217 MPEQSNDY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISSNKTICTL 387
M +S DY ++++ G GVGKS L+LRF + +F S+I TI ++ + I + L
Sbjct: 1 MSTKSYDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKL 60
Query: 388 QITDTTGSHQFPAMQRLSISKGHAFILVYSVSSRQSLEELKPIWQTIKEIKGVELPNIPV 567
QI DT G +F + +L+Y V+ ++S + ++ + +++ N+
Sbjct: 61 QIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHAS---ENVYK 117
Query: 568 MLAGNKCD 591
+L GNKCD
Sbjct: 118 ILIGNKCD 125
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 60.5 bits (140), Expect = 2e-10
Identities = 44/132 (33%), Positives = 70/132 (53%), Gaps = 7/132 (5%)
Frame = +1
Query: 217 MPEQSNDY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVIS----SNKT 375
M ++S DY ++V+ G G GKS L+ RFVK + + T+ D ++IS + +
Sbjct: 1 MDKESYDYLVKIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQK 60
Query: 376 ICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVSSRQSLEELKPIWQTIKEIKGVELP 555
LQI DT G +F ++ R +LVY V+++ S EEL W + +I+ +
Sbjct: 61 RIKLQIWDTAGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSS-W--LSDIRAMAPS 117
Query: 556 NIPVMLAGNKCD 591
I V+LAG+K D
Sbjct: 118 TICVVLAGSKSD 129
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 59.3 bits (137), Expect = 4e-10
Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 2/120 (1%)
Frame = +1
Query: 238 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISSNKTICTLQITDTTGS 411
++ V+ G GVGKS+L++RF + F TI E R ++ NK I QI DT G
Sbjct: 11 FKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKI-KAQIWDTAGQ 69
Query: 412 HQFPAMQRLSISKGHAFILVYSVSSRQSLEELKPIWQTIKEIKGVELPNIPVMLAGNKCD 591
++ A+ ++VY ++ + S + + + +KE++ NI +ML GNK D
Sbjct: 70 ERYRAITSAYYRGAVGALIVYDITKQSSFDN---VGRWLKELREHADSNIVIMLVGNKTD 126
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 56.4 bits (130), Expect = 3e-09
Identities = 32/125 (25%), Positives = 62/125 (49%), Gaps = 1/125 (0%)
Frame = +1
Query: 220 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI-EDTYRQVISSNKTICTLQIT 396
P+ +++V+ G GG GK++ V R + G F + YI T+ + + +N +
Sbjct: 4 PQNVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVW 63
Query: 397 DTTGSHQFPAMQRLSISKGHAFILVYSVSSRQSLEELKPIWQTIKEIKGVELPNIPVMLA 576
DT G + ++ +G I+++ V+SR + + + W+ + + NIP++L
Sbjct: 64 DTAGQEKLGGLRDGYYIQGQCGIIMFDVTSRITYKNVPHWWRDLVRV----CENIPIVLC 119
Query: 577 GNKCD 591
GNK D
Sbjct: 120 GNKVD 124
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 55.2 bits (127), Expect = 7e-09
Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 4/121 (3%)
Frame = +1
Query: 241 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY--RQVISSNKTICTLQITDTTGSH 414
+V++ G GVGK+S++ ++V F + Y TI + ++V+ +K + TLQ+ DT G
Sbjct: 10 KVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVV-TLQLWDTAGQE 68
Query: 415 QFPAMQRLSISKGHAFILVYSVSSRQSLEELKPIW--QTIKEIKGVELPNIPVMLAGNKC 588
+F ++ +LVY V++ +S E L W + + + P +L GNK
Sbjct: 69 RFQSLGVAFYRGADCCVLVYDVNNSKSFETLDS-WRDEFLIQASPSNPETFPFILLGNKV 127
Query: 589 D 591
D
Sbjct: 128 D 128
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 52.4 bits (120), Expect = 5e-08
Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Frame = +1
Query: 241 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY--RQVISSNKTICTLQITDTTGSH 414
+VV+ G GVGK+ L+ +FV F Y TI + + V+ +K + TLQ+ DT G
Sbjct: 10 KVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLV-TLQLWDTAGQE 68
Query: 415 QFPAMQRLSISKGHAFILVYSVSSRQSLEELKPIWQTIKEIKGVELPNIPVMLAGNKCDE 594
+F ++ ++VY+V++ +S + ++ Q + P ++ GN+ D+
Sbjct: 69 RFQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTSQDECAFPFIIVGNQIDK 128
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 50.4 bits (115), Expect = 2e-07
Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Frame = +1
Query: 238 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISSNKTICTLQITDTTGSH 414
+++V G VGK+SL+ RF+ F +Y TI D + + LQ+ DT G
Sbjct: 12 FKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 71
Query: 415 QFPAMQRLSISKGHAFILVYSVSSRQSLEELKPIWQTIKEIKGVELPNIPVMLAGNKCD 591
+F ++ I I+VY +++ S + W I++++ ++ ++L GNK D
Sbjct: 72 RFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEK-W--IEDVRAERGDDVIIVLVGNKTD 127
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 48.4 bits (110), Expect = 8e-07
Identities = 30/118 (25%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Frame = +1
Query: 241 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISSNKTICTLQITDTTGSHQ 417
+V + G +GK+SL++ +V+G+F E T+ + + IS T T I D G +
Sbjct: 12 KVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQRE 71
Query: 418 FPAMQRLSISKGHAFILVYSVSSRQSLEELKPIWQTIKEIKGVELPNIPVMLAGNKCD 591
F M + + A + ++ +S + +L +K W ++ +G +P+++ G K D
Sbjct: 72 FVNMLPMVCNDAVAILFMFDLSRKSTLNSIKE-W--YRQARGFNKTAVPILI-GTKYD 125
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 37.1 bits (82), Expect = 0.002
Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 4/124 (3%)
Frame = +1
Query: 235 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQV-ISSN---KTICTLQITDT 402
+ RVV+ G GVGKSSL+ + +E + +I + + I SN +L + DT
Sbjct: 3 EVRVVICGDQGVGKSSLISALI----QEDNVTSIPKVFPIISIPSNPDSNDDVSLVLVDT 58
Query: 403 TGSHQFPAMQRLSISKGHAFILVYSVSSRQSLEELKPIWQTIKEIKGVELPNIPVMLAGN 582
I K + LVY S S E + W GV N+P++L N
Sbjct: 59 QSDSNEREYLAAEIKKANVICLVY--SDNYSYERVSIFWLPYFRSLGV---NVPIVLCEN 113
Query: 583 KCDE 594
K ++
Sbjct: 114 KSED 117
>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 762
Score = 29.5 bits (63), Expect = 0.39
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 508 KPIWQTIKEIKGVELPNIPVMLAGNKCDE 594
+ IW TI+ K ++LP +LA +CDE
Sbjct: 265 REIWDTIENNKDLDLPTQQQLLAQYRCDE 293
>SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 202
Score = 29.5 bits (63), Expect = 0.39
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +1
Query: 244 VVVFGAGGVGKSSLVLRFVK 303
VVVFG GVGKS+L+ R +K
Sbjct: 21 VVVFGPSGVGKSTLLKRLLK 40
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 29.1 bits (62), Expect = 0.52
Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Frame = +1
Query: 244 VVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQ-VISSNKTICTLQITDTTGSHQF 420
V + G GK++L+ F K T + I + +K + DT G F
Sbjct: 174 VTLMGHVDHGKTTLLDAFRKSTIASTEHGGITQKIGAFTVPFDKGSKFITFLDTPGHMAF 233
Query: 421 PAMQRLSISKGHAFILVYSVSSRQSLEELKPIWQTIKEIKGVELPNIPVMLAGNKCD 591
AM++ + +LV + + +KP QT++ IK ++ ++PV++A K D
Sbjct: 234 EAMRKRGANIADIVVLVVAGD-----DGVKP--QTVEAIKHIQSADVPVVVALTKSD 283
>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 609
Score = 29.1 bits (62), Expect = 0.52
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = +1
Query: 256 GAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISSNKTICTLQITDTTGSHQF 420
G G S++ GT +Y T+ D V T T+ T T+GSH+F
Sbjct: 70 GRGTTNHSTIYTTINSGTVASTYTVTLADGDVVVKDIEPTAGTVTTTITSGSHEF 124
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 27.9 bits (59), Expect = 1.2
Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +1
Query: 232 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISSN--KTICTL 387
ND +V++ GAG GK++ +++ ++ + + + YR +I N ++C L
Sbjct: 73 NDIKVLLLGAGDSGKTT-IMKQMRLLYSPGFSQVVRKQYRVMIFENIISSLCLL 125
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,403,804
Number of Sequences: 5004
Number of extensions: 46542
Number of successful extensions: 140
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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