Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9m19
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces...    44   2e-05
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    42   1e-04
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    40   3e-04
SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces pombe...    28   1.1  
SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug...    27   3.3  

>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 662

 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 23/85 (27%), Positives = 43/85 (50%)
 Frame = +3

Query: 243 HEGISLTYEELLIRADSMAYGLRNQGLQKGDRVGIWSHNSVSYLVSLVAAARAGLISVLI 422
           ++G  +TY ELL      A  L++ G+  GDRV I+       +++++A  R G I  +I
Sbjct: 113 NQGRYITYRELLASVSQCAGALQSMGVGMGDRVAIYMPMIPETIIAMLAIVRLGAIHSVI 172

Query: 423 NPAYEKKELSFCIKKSEMKCLLIGD 497
              +  + ++  +  SE K ++  D
Sbjct: 173 FAGFSAESVADRVNDSECKVIITAD 197


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1517

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
 Frame = +3

Query: 246 EGISLTYEELLIRADSMAYGLRNQ-GLQKGDRVGIWSHN--SVSYLVSLVAAARAGLISV 416
           E  S+T+E+L  RA+ +A  +R++ GL + DRV +   +  ++ ++VSL     AG+++V
Sbjct: 190 EFTSITWEKLASRAEKVAQVIRDKSGLFRSDRVVLMYRDCEAIDFVVSLFGCFIAGVVAV 249

Query: 417 LINPAYEKKELSFCIKKSEMKCLLIGDA 500
            IN   +  ELS  +  +  +  L  DA
Sbjct: 250 PINRFDDYNELSSILTTTSARLALTTDA 277


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 18/79 (22%), Positives = 44/79 (55%)
 Frame = +3

Query: 255 SLTYEELLIRADSMAYGLRNQGLQKGDRVGIWSHNSVSYLVSLVAAARAGLISVLINPAY 434
           S TY ++   ++ +A+ L   G+++GD V ++++  V  +V+++   +AG    +I+PAY
Sbjct: 312 SYTYRQIDESSNILAHHLVKNGIERGDVVMVYAYRGVDLVVAVMGVLKAGATFSVIDPAY 371

Query: 435 EKKELSFCIKKSEMKCLLI 491
                   +  ++ + L++
Sbjct: 372 PPARQIIYLSVAKPRALVV 390


>SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 395

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +3

Query: 486 LIGDALPKREYYRTLEQLIPELKDGKPGLLKSREFPFL 599
           LI  A+ +  Y+R    +   LK  KP LL SR FP L
Sbjct: 232 LIPCAIDQDPYFRLTRDVSGRLKFKKPALLHSRFFPAL 269


>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
           Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +3

Query: 216 PGRVAVKSMHEGISLTYEELLIRADSMAYGLRNQGLQKGDRVGIWSHNS 362
           P  +     + GI  T   LL   D   +G+  +GL +G RVGIW  +S
Sbjct: 358 PQTIVPVGKYTGIVGTIWCLLSEEDPGKFGI--EGLYRGWRVGIWGMSS 404


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,463,733
Number of Sequences: 5004
Number of extensions: 46869
Number of successful extensions: 102
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)