Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt9m17
(710 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC970.03 |||cytochrome b5 reductase |Schizosaccharomyces pombe... 126 3e-30
SPAC17H9.12c |||NADH-cytochrome reductase|Schizosaccharomyces po... 33 0.030
SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces pom... 28 1.5
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p... 27 3.5
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo... 26 4.6
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp... 26 6.1
SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces po... 26 6.1
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr... 26 6.1
SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 25 8.1
>SPCC970.03 |||cytochrome b5 reductase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 301
Score = 126 bits (304), Expect = 3e-30
Identities = 72/177 (40%), Positives = 104/177 (58%), Gaps = 1/177 (0%)
Frame = +3
Query: 183 LIEREEISHDTRRFRLGLPSPQHVLGLPIGQHIHLSAKINDDLVIRAYTPVSSDEDKGYV 362
L ++ ++H+T +R LP VLGLPIGQH+ + ++ R+YTP+SSD DKGY
Sbjct: 66 LSDKAVLNHNTAIYRFRLPRANDVLGLPIGQHLKVFVDVDGKEYSRSYTPLSSDADKGYF 125
Query: 363 DLVIKVYFKNVHPKFPEGGKLSQYLNNMKINDTIDVRGPSGRLQY-TGNGTFLIKKLRKD 539
DL++K Y GK+S+ + +KI DTI VRGP G ++ TG
Sbjct: 126 DLLVKSY---------PNGKVSKKFSELKIGDTIGVRGPKGNWKHRTG------------ 164
Query: 540 PPTKVVVKKLNLIAGGTGIAPMLQLVRHICTDVNDRTELKLLFANQSEDDILLRDEL 710
+ + +IAGGTGI PMLQ++R + ++ D TE+ LL+AN SE DI+LRDE+
Sbjct: 165 -----LARHFGMIAGGTGITPMLQIIRAVLSNFEDPTEITLLYANVSEGDIVLRDEI 216
>SPAC17H9.12c |||NADH-cytochrome reductase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 266
Score = 33.5 bits (73), Expect = 0.030
Identities = 46/173 (26%), Positives = 82/173 (47%), Gaps = 2/173 (1%)
Frame = +3
Query: 198 EISHDTRRFRLGLPSP-QHVLGL-PIGQHIHLSAKINDDLVIRAYTPVSSDEDKGYVDLV 371
E++ D F L SP +H+ L PI + ++ + V R YTP+ D ++
Sbjct: 52 ELTSDASLFSLVPQSPSEHLTTLEPIAK---VTIRDPSMQVQRPYTPLYLDANE------ 102
Query: 372 IKVYFKNVHPKFPEGGKLSQYLNNMKINDTIDVRGPSGRLQYTGNGTFLIKKLRKDPPTK 551
+K + + K+ EG +S Y+++ K DTI++RGP F KL +
Sbjct: 103 LKFFIR----KYEEG-PVSSYIHSKKEGDTIELRGP-----------FKTTKLDCTKYPR 146
Query: 552 VVVKKLNLIAGGTGIAPMLQLVRHICTDVNDRTELKLLFANQSEDDILLRDEL 710
+V I GTGIAP+ QL + + ++ + +++ ++ LL++EL
Sbjct: 147 IVA-----IVAGTGIAPIYQLAQSV------KSPVDIVYCSRPGQPPLLKEEL 188
>SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 27.9 bits (59), Expect = 1.5
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = +3
Query: 414 GGKLSQYLN-NMKINDTIDVRGPSGRLQYTGNGTFLIKKLRKDPPTKVVVKKLNLIAGGT 590
GG +S +++ N+K+ D + V P+ G F+ K+ ++ V + L AGG
Sbjct: 256 GGVVSNFVHDNLKVGDIVGVSPPA--------GNFVYKRSEEN-----VNRPLLCFAGGI 302
Query: 591 GIAPMLQLVRHICTD 635
GI P++ ++ D
Sbjct: 303 GITPLIPIIETALLD 317
>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 521
Score = 26.6 bits (56), Expect = 3.5
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +3
Query: 423 LSQYLNNMKINDTIDVRG 476
LS+Y+NN+K+ND + G
Sbjct: 68 LSRYVNNIKLNDRFEAEG 85
>SPAC20G8.10c ||SPAC3A12.01c|beclin family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 464
Score = 26.2 bits (55), Expect = 4.6
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = +1
Query: 466 MSVDRQGDCSTQETEHSSLRN*EKIRLQKLS 558
+S++RQ DC+ E EH+S R EK LQK++
Sbjct: 249 LSLERQYDCANLEFEHNS-RKLEK--LQKMN 276
>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1210
Score = 25.8 bits (54), Expect = 6.1
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 528 LRKDPPTKVVVKKLNLIAGGTGIAPMLQLVRHICTDVNDRTELKLL 665
+R D P +V + L G+ P ++ HIC D ND L+++
Sbjct: 262 IRSDIPIVIVFRAL-------GVVPDRDILEHICYDPNDFQMLEMM 300
>SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 25.8 bits (54), Expect = 6.1
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = -1
Query: 392 ILKVYLDNQIDIAFILIARHR 330
I+K YL+ I++A +L+ +HR
Sbjct: 126 IIKGYLEKAIELATVLVIKHR 146
>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 591
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -2
Query: 133 LDPLDFFPHRQLAIIVAKTTTDPTP 59
LDP +F +R I+ + T DP P
Sbjct: 70 LDPSQYFENRSRTIMELRQTKDPNP 94
>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
Srp101|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +3
Query: 411 EGGKLSQYLNNMKINDTIDVRGPSGRLQYTGNGTFLIKKLRKDP 542
+ SQ ++N +++ + G + + Q TG+G +I L DP
Sbjct: 191 QASSASQTVDNSQLSSIV---GNNNKFQKTGSGDVIISDLEMDP 231
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,831,306
Number of Sequences: 5004
Number of extensions: 59535
Number of successful extensions: 170
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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