Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9m17
         (710 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016452-12|AAB66011.1|  309|Caenorhabditis elegans Hypothetical...   253   8e-68
AF016452-13|AAB66010.1|  303|Caenorhabditis elegans Hypothetical...   239   1e-63
AL032654-5|CAD91715.2|  516|Caenorhabditis elegans Hypothetical ...    45   6e-05
AL032654-4|CAA21721.2|  552|Caenorhabditis elegans Hypothetical ...    45   6e-05
Z70684-6|CAA94595.1|  230|Caenorhabditis elegans Hypothetical pr...    28   7.6  
Z35604-2|CAA84677.1|  809|Caenorhabditis elegans Hypothetical pr...    28   7.6  
U19744-1|AAA85704.1|  809|Caenorhabditis elegans integrin beta p...    28   7.6  

>AF016452-12|AAB66011.1|  309|Caenorhabditis elegans Hypothetical
           protein T05H4.5 protein.
          Length = 309

 Score =  253 bits (620), Expect = 8e-68
 Identities = 116/188 (61%), Positives = 147/188 (78%)
 Frame = +3

Query: 147 TLVDSNVKYALPLIEREEISHDTRRFRLGLPSPQHVLGLPIGQHIHLSAKINDDLVIRAY 326
           TLVD +VKY LPLIE+ EISHDTR+FR GLPS  H+LGLPIGQH++L+A I+  +++R Y
Sbjct: 43  TLVDDSVKYPLPLIEKFEISHDTRKFRFGLPSKDHILGLPIGQHVYLTANIDGKIIVRPY 102

Query: 327 TPVSSDEDKGYVDLVIKVYFKNVHPKFPEGGKLSQYLNNMKINDTIDVRGPSGRLQYTGN 506
           TPVSSDED G+VDL++KVYFKN + KFPEGGK+SQ+L ++KI DTI+ RGP G + Y G+
Sbjct: 103 TPVSSDEDLGFVDLMVKVYFKNTNEKFPEGGKMSQHLESLKIGDTINFRGPQGNIVYKGH 162

Query: 507 GTFLIKKLRKDPPTKVVVKKLNLIAGGTGIAPMLQLVRHICTDVNDRTELKLLFANQSED 686
           G F IK  +K  P   V K L++IAGGTGI PMLQ++  I  D  D T+++LLFANQ+ED
Sbjct: 163 GLFSIKADKKAEPKNRVFKHLSMIAGGTGITPMLQVIAAILRDPTDTTQIRLLFANQTED 222

Query: 687 DILLRDEL 710
           DIL R EL
Sbjct: 223 DILCRQEL 230


>AF016452-13|AAB66010.1|  303|Caenorhabditis elegans Hypothetical
           protein T05H4.4 protein.
          Length = 303

 Score =  239 bits (585), Expect = 1e-63
 Identities = 109/188 (57%), Positives = 141/188 (75%)
 Frame = +3

Query: 147 TLVDSNVKYALPLIEREEISHDTRRFRLGLPSPQHVLGLPIGQHIHLSAKINDDLVIRAY 326
           TL D +VKY LPLIE+ EISH+TR+FR GLPS  H+LGLPIG H++LSA I   L++R+Y
Sbjct: 37  TLEDDSVKYLLPLIEKFEISHNTRKFRFGLPSKDHILGLPIGHHVYLSANIGGKLIVRSY 96

Query: 327 TPVSSDEDKGYVDLVIKVYFKNVHPKFPEGGKLSQYLNNMKINDTIDVRGPSGRLQYTGN 506
           TPVS D D GYVDL++KVYFKN H +FP+GGK+SQ+L ++KI DT+  RGP G + Y G+
Sbjct: 97  TPVSCDLDLGYVDLMVKVYFKNTHERFPDGGKMSQHLESLKIGDTVSFRGPHGSIIYKGS 156

Query: 507 GTFLIKKLRKDPPTKVVVKKLNLIAGGTGIAPMLQLVRHICTDVNDRTELKLLFANQSED 686
           G F ++  +K  P     K L++IAGGTGI PMLQ++  I  D  D T+++LLFANQ+ED
Sbjct: 157 GLFTVRMDKKAEPKNRFFKHLSMIAGGTGITPMLQVIAAILRDPIDATQIRLLFANQTED 216

Query: 687 DILLRDEL 710
           DIL R EL
Sbjct: 217 DILCRKEL 224


>AL032654-5|CAD91715.2|  516|Caenorhabditis elegans Hypothetical
           protein Y52B11A.3b protein.
          Length = 516

 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 44/185 (23%), Positives = 80/185 (43%), Gaps = 15/185 (8%)
 Frame = +3

Query: 183 LIEREEISHDTRRFRLGLPSPQHVLGLPIGQHIHLSAKIND--------------DLVIR 320
           +I+R  ++HDT  F L LP       +PIG H+ +  +                  ++ R
Sbjct: 256 IIDRYRLNHDTLIFSLQLPE-HTTYRIPIGHHVSIKIRKGSMGKFSWKFFLIFGYSVLYR 314

Query: 321 AYTPVSSDEDKGYVDLVIKVYFKNVHPKFPEGGKLSQYLNNMKINDTIDVRGPSGRLQYT 500
            YTP+S+  D   +D +IK+Y           G  +  L N+KI   +++  P G   + 
Sbjct: 315 PYTPISNP-DPQKIDFMIKIY---------SNGICTPSLENLKIGGELEISDPIGERNFA 364

Query: 501 GNGTFLIKKLRKDPPTKVVVKKLNLIAGGTGIAPMLQLV-RHICTDVNDRTELKLLFANQ 677
                               ++L L+A G+GI PM+ ++ + I    N  +++  L  N+
Sbjct: 365 --------------EWTENAQELILLAAGSGITPMIDIMEKRIQKTENSNSKVYFLMFNK 410

Query: 678 SEDDI 692
           +E+D+
Sbjct: 411 TENDL 415


>AL032654-4|CAA21721.2|  552|Caenorhabditis elegans Hypothetical
           protein Y52B11A.3a protein.
          Length = 552

 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 44/185 (23%), Positives = 80/185 (43%), Gaps = 15/185 (8%)
 Frame = +3

Query: 183 LIEREEISHDTRRFRLGLPSPQHVLGLPIGQHIHLSAKIND--------------DLVIR 320
           +I+R  ++HDT  F L LP       +PIG H+ +  +                  ++ R
Sbjct: 292 IIDRYRLNHDTLIFSLQLPE-HTTYRIPIGHHVSIKIRKGSMGKFSWKFFLIFGYSVLYR 350

Query: 321 AYTPVSSDEDKGYVDLVIKVYFKNVHPKFPEGGKLSQYLNNMKINDTIDVRGPSGRLQYT 500
            YTP+S+  D   +D +IK+Y           G  +  L N+KI   +++  P G   + 
Sbjct: 351 PYTPISNP-DPQKIDFMIKIY---------SNGICTPSLENLKIGGELEISDPIGERNFA 400

Query: 501 GNGTFLIKKLRKDPPTKVVVKKLNLIAGGTGIAPMLQLV-RHICTDVNDRTELKLLFANQ 677
                               ++L L+A G+GI PM+ ++ + I    N  +++  L  N+
Sbjct: 401 --------------EWTENAQELILLAAGSGITPMIDIMEKRIQKTENSNSKVYFLMFNK 446

Query: 678 SEDDI 692
           +E+D+
Sbjct: 447 TENDL 451


>Z70684-6|CAA94595.1|  230|Caenorhabditis elegans Hypothetical
           protein F28D1.6 protein.
          Length = 230

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = +3

Query: 207 HDTRRFRLGL-PSPQHVLGLPIGQHIHLSAKINDDLVIRAYTPVSSDEDKG 356
           HDT +   G  P P  V   P      L  + +DD  ++  TP  S E+ G
Sbjct: 137 HDTEKPSDGTTPEPPQVFTKPSSMWDFLGDEDDDDTTVKVTTPAPSKEEPG 187


>Z35604-2|CAA84677.1|  809|Caenorhabditis elegans Hypothetical
           protein ZK1058.2 protein.
          Length = 809

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = +3

Query: 498 TGNGTFLIKKLRKD--PPTKVVVKKLNLIAGGTGIAPMLQLVRHICTDVNDRTE 653
           T N T  ++K  KD  PP  V+   L +IAG   +  +L L+  + T ++DR+E
Sbjct: 719 TDNATVWVRK-HKDCPPPVPVLAIVLGVIAGIVILGILLLLLWKLLTVLHDRSE 771


>U19744-1|AAA85704.1|  809|Caenorhabditis elegans integrin beta
           pat-3 protein.
          Length = 809

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = +3

Query: 498 TGNGTFLIKKLRKD--PPTKVVVKKLNLIAGGTGIAPMLQLVRHICTDVNDRTE 653
           T N T  ++K  KD  PP  V+   L +IAG   +  +L L+  + T ++DR+E
Sbjct: 719 TDNATVWVRK-HKDCPPPVPVLAIVLGVIAGIVILGILLLLLWKLLTVLHDRSE 771


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,809,707
Number of Sequences: 27780
Number of extensions: 340198
Number of successful extensions: 805
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)