Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9m14
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb...    31   0.15 
SPBC2G5.07c |rpc25||DNA-directed RNA polymerase III complex subu...    28   1.1  
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    28   1.1  
SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|...    25   7.5  
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.5  
SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces po...    25   7.5  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    25   7.5  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    22   8.2  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   9.9  

>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 827

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
 Frame = +3

Query: 294 GFNVNIEEDAGAVANFPNKTYEEA-GAKITNLKTTFQSDIVLKV--RPLLNNEIQNVRNE 464
           GF   +E++     N  N+  EE+   +  N  T+F  D  LKV  +PL+ + I+N  +E
Sbjct: 343 GFGKGLEQENEEEWNGINEEAEESEDEESVNSDTSFVDDEQLKVEEQPLVGSAIKNEGSE 402

Query: 465 GTLISFLYP 491
              +++ YP
Sbjct: 403 KASLAYTYP 411


>SPBC2G5.07c |rpc25||DNA-directed RNA polymerase III complex subunit
           Rpc25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 203

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 397 NVVFKFVIFAPASS*VLLGKLATAPASSSILTLKPF 290
           NVVF+ +IF P    V+LGK+ +       +T+  F
Sbjct: 69  NVVFRLIIFRPFRGEVMLGKIKSCSEEGIRVTISFF 104


>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 17/54 (31%), Positives = 32/54 (59%)
 Frame = +3

Query: 372 KITNLKTTFQSDIVLKVRPLLNNEIQNVRNEGTLISFLYPAQNQDLIKKLSERK 533
           K+TN KT+F    +L+    L +E+  +RNE  L++     +N+DL+ +L  ++
Sbjct: 541 KLTNRKTSFTDSHILR----LQDEVNQLRNELDLVN----KRNEDLLIELQGKE 586


>SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 274

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +1

Query: 313 KKMQVL*LIFLIRLMKRLEQKLQT*KLHSNLI 408
           KK+QVL LI+ I  ++RL + L+  K  S ++
Sbjct: 104 KKLQVLLLIYEIHTLRRLYENLRFRKSGSKML 135


>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +2

Query: 473 DIFPLSCSKSRFNKKAF*KKDECICYGLHSPYKSRT 580
           D+FP   SK +F  K F KKD+      +  +   T
Sbjct: 10  DLFPTEISKVKFFTKDFSKKDKLTALDTYRSFPGST 45


>SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 412

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 16/54 (29%), Positives = 32/54 (59%)
 Frame = +3

Query: 387 KTTFQSDIVLKVRPLLNNEIQNVRNEGTLISFLYPAQNQDLIKKLSERKMNAFA 548
           +T+  ++  L+V P  N E+  +  +GT I   YP QNQ + +K  ++K+++ +
Sbjct: 272 ETSVPANSTLQV-PTENVEVDVLGKDGTNI---YPTQNQVVEQKQMQQKLDSMS 321


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 414 LKVRPLLNNEIQNVRNEGTLISFLYPAQNQDLIKKLSER 530
           +KV+PLL NE+Q  +   T+   L       L+   SE+
Sbjct: 47  IKVQPLLANEVQTFKALITIHRVLQEGHKSALVDSQSEK 85


>SPBC1826.01c |mot1||TATA-binding protein associated factor
            Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 22.2 bits (45), Expect(2) = 8.2
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -1

Query: 587  KCLCATYTGNAVHSKCIHL 531
            KC  A    NA  SK +HL
Sbjct: 1218 KCFAAITESNAAGSKALHL 1236



 Score = 21.0 bits (42), Expect(2) = 8.2
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 488  IEERYQCSFIPYILYFII 435
            + +R     +PYILY II
Sbjct: 1264 VVQRLGVRILPYILYLII 1281


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 67  YLNNCSPVGAFTARSSKYLSFN 2
           YL+NC  +G  T   S YLS N
Sbjct: 301 YLSNCKKLGISTLPPSNYLSPN 322


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,515,911
Number of Sequences: 5004
Number of extensions: 49013
Number of successful extensions: 138
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)