Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9m14
         (671 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0369 - 2743412-2743502,2744007-2744174,2744265-2744380,274...    29   2.6  
09_02_0296 + 7041463-7042351,7042450-7042606,7042758-7042839,704...    28   7.8  

>07_01_0369 -
           2743412-2743502,2744007-2744174,2744265-2744380,
           2744981-2745136
          Length = 176

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 422 NFQNYIRLECSF*VCNFCSSLFISLIRK 339
           NF +Y +L+ SF V  FCSS+  S + K
Sbjct: 149 NFSSYFKLQSSFLVPRFCSSIAASSLDK 176


>09_02_0296 +
           7041463-7042351,7042450-7042606,7042758-7042839,
           7043082-7043120
          Length = 388

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 12/88 (13%)
 Frame = +3

Query: 345 NKTYEEAGAKITNLKTTFQSDIVLKVRPLLNNEIQNVRNEGTLISFLYPA-QNQ------ 503
           +K YE++      +  T     + K  P++   I+ + NE T + +L P  QN+      
Sbjct: 203 SKLYEDSNGNFLGMVET-----LAKFDPVIQEHIRRITNEETHVHYLIPRIQNELIHLLA 257

Query: 504 -----DLIKKLSERKMNAFAMDCIPRIS 572
                +++KK+   K  +  +DC P  S
Sbjct: 258 CDVKAEIMKKIKRAKYFSVILDCTPDTS 285


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,198,500
Number of Sequences: 37544
Number of extensions: 279398
Number of successful extensions: 559
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)