Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9m14
         (671 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U56965-10|AAB52670.1| 1041|Caenorhabditis elegans Nicotinamide n...   167   8e-42
Z81502-2|CAB04106.2|  720|Caenorhabditis elegans Hypothetical pr...    29   4.0  
Z74472-5|CAA98943.1|  802|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z92829-9|CAB07349.1|  360|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>U56965-10|AAB52670.1| 1041|Caenorhabditis elegans Nicotinamide
           nucleotide transhydrogenaseprotein 1 protein.
          Length = 1041

 Score =  167 bits (405), Expect = 8e-42
 Identities = 80/160 (50%), Positives = 106/160 (66%)
 Frame = +3

Query: 192 VSYTKLSIGVPKEIWQDERRXXXXXXXXXXXXXXGFNVNIEEDAGAVANFPNKTYEEAGA 371
           + Y+KL + VPKEI+  E+R              G +V IEE+AG +A + N+ Y  +GA
Sbjct: 24  IEYSKLKVAVPKEIFPGEKRVSLSPNGVALLKKNGISVLIEENAGVLAGYSNEEYVRSGA 83

Query: 372 KITNLKTTFQSDIVLKVRPLLNNEIQNVRNEGTLISFLYPAQNQDLIKKLSERKMNAFAM 551
            +      F +DI+LKVRP   NE+  +++  TLISF++P QNQ L+  L++     FAM
Sbjct: 84  DVGKHNEVFNTDIMLKVRPPTENEVSKLKSGCTLISFIHPGQNQALLDSLTKTDKTVFAM 143

Query: 552 DCIPRISRAQAFDALSSMANVAGYRAVIEAAAHFPRFFSG 671
           DC+PRISRAQ FDALSSMAN+AGYRAVIEAA HF RFF+G
Sbjct: 144 DCVPRISRAQVFDALSSMANIAGYRAVIEAANHFGRFFTG 183


>Z81502-2|CAB04106.2|  720|Caenorhabditis elegans Hypothetical
           protein F14B6.2 protein.
          Length = 720

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -1

Query: 467 SFIPYILYFII*EWTNFQNYIRLECSF*VCNFCSSLFISLIRKISY 330
           S +P+I+   +  W+ F  +I  +  F V  F +SL I+++  I Y
Sbjct: 612 STVPFIMGICVPRWSLFVLHIVFDFLFLVVGFVTSLTIAIMSSIMY 657


>Z74472-5|CAA98943.1|  802|Caenorhabditis elegans Hypothetical
           protein F23H12.5 protein.
          Length = 802

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 20/62 (32%), Positives = 32/62 (51%)
 Frame = +1

Query: 46  QGYSCLNISKTFPKCADPQECFVHINNYQDHGNADCQVALQLRLRQPQEFLTPN*A*ECQ 225
           +GY CL  +K F  C  P +   +  +Y+D   AD ++A++ +L Q  E   P+ A   Q
Sbjct: 55  RGYKCLGHNKEFQSCNSPPK--RNSLDYEDPETADREMAMK-QLYQDYEPEIPDEAKYAQ 111

Query: 226 KR 231
            R
Sbjct: 112 TR 113


>Z92829-9|CAB07349.1|  360|Caenorhabditis elegans Hypothetical
           protein F10A3.13 protein.
          Length = 360

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -3

Query: 540 HSSFFQKAFLLNLDFEQDRGKISMFLHSLHFVFHYLGV 427
           HS F + + LL L F     ++ + L ++HF++ YL V
Sbjct: 83  HSGFSKPSGLLFLSFSDAFYRMIITLLAIHFLYRYLSV 120


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,809,020
Number of Sequences: 27780
Number of extensions: 278638
Number of successful extensions: 658
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)