Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9m10
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom...    29   0.46 
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    28   1.4  
SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyc...    27   1.9  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    27   2.5  
SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr 1...    27   2.5  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    26   4.3  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    26   5.7  
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy...    25   9.9  

>SPAC959.03c |||U3 snoRNP-associated protein
           Utp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 520

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +1

Query: 385 METYLSERTGGQIDQAALQQQYSVQLENKLRERDTYWEQKIEE 513
           +  YL +     +DQ  L+ + S+++E K+R +    EQK+ E
Sbjct: 462 LRRYLRKHARNVVDQRRLKVEKSLEIEKKMRAQRVRREQKLPE 504


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 457  QLENKLRERDTYWEQKIEELK 519
            +LE KL+E D YW   +EEL+
Sbjct: 993  ELEKKLKEADEYWLLIVEELE 1013


>SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 553

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +1

Query: 175 YLLDISQVIMFASLKSKIKEETGSDISKLTSSWRSGGFLG 294
           YLLD++  ++ AS +S I +   SD     +SW +G  +G
Sbjct: 151 YLLDVAVNVVMASTRSLIVDSVRSDQQHEANSW-AGRMIG 189


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
 Frame = +1

Query: 382  QMETYLSERTGGQIDQAALQQQYSVQLENKLRERDTYWE--QKIEELKLSLATVQGEXXX 555
            Q E  L E   G ID  +LQ+          R RDT+++  QKIEEL+  +   +     
Sbjct: 1248 QTEKQLLEVNQGAIDLGSLQEL--------TRWRDTFYDCIQKIEELEKQIDVARD---- 1295

Query: 556  XXXXXXXXXXXXXXXXXNERDLAEKHVSELRTQ 654
                             NE++LAE+ V EL++Q
Sbjct: 1296 -VAEDTKSLGKELQNKINEKNLAEQKVEELQSQ 1327


>SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 486

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 476 LNLFSSCTEYCCCNAAWSI 420
           LN+   C +YCC +  WS+
Sbjct: 351 LNVQKKCIKYCCTSNGWSL 369


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 175 YLLDISQVIMFASLKSKIKEETGSDISKLTSSW 273
           YLL   ++  F   +S ++EE+G ++ KL  S+
Sbjct: 55  YLLTCKELAGFFKKRSILEEESGKNLQKLAKSY 87


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
            Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +1

Query: 187  ISQVIMFASLKSKIKEETGSDISKLTSSWRSGGFLG 294
            I +V+   + ++++ +E  S  S +T  W+ GG +G
Sbjct: 1092 IGRVLDDTTKENRLLKELASSKSNITIRWQQGGLIG 1127


>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 298 FFLKSHHFSNYWSIY*CHFLFPLLFYFLN 212
           +F + HHF +      C FL  + FY +N
Sbjct: 339 YFRQWHHFKHLLGTSVCWFLLDIAFYGVN 367


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,241,633
Number of Sequences: 5004
Number of extensions: 39525
Number of successful extensions: 117
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)