Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9m10
         (671 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0115 + 20288220-20288303,20289223-20289706,20290160-202903...    31   0.84 
05_06_0237 + 26618195-26618425,26618518-26618640,26619569-266197...    30   1.9  
08_02_0627 + 19449196-19449651,19449723-19449861,19450260-194503...    29   4.5  
07_03_0395 + 17644813-17644921,17644961-17645084,17645545-176462...    29   4.5  
11_06_0119 + 20321687-20323624                                         28   7.8  
02_02_0157 - 7280335-7280541,7280656-7280762,7280918-7281097,728...    28   7.8  

>11_06_0115 +
           20288220-20288303,20289223-20289706,20290160-20290393,
           20291811-20292770,20292931-20293404,20293406-20294664
          Length = 1164

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 324 NQPLELWWSWRLTG*FHLSANGNILVGT 407
           NQPL   W W LT   +L  +GN +VG+
Sbjct: 45  NQPLASCWFWNLTSLKYLDLSGNNIVGS 72


>05_06_0237 +
           26618195-26618425,26618518-26618640,26619569-26619736,
           26619824-26621497
          Length = 731

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 279 WWLFRKNITQR*FVSNQPLELWWS 350
           WWLF  + T+     N  LE+W+S
Sbjct: 222 WWLFASDFTRHGIEKNAELEIWYS 245


>08_02_0627 +
           19449196-19449651,19449723-19449861,19450260-19450381,
           19450685-19450888,19450981-19451040,19451628-19451820,
           19451880-19451998,19452189-19452413,19452534-19452728
          Length = 570

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +1

Query: 418 QIDQAALQQQYSVQLENKLRER--DTYWEQKIEELKLSLATVQGE 546
           Q +Q    QQ   +LE+ + E+    +W   + E  L+LAT+ GE
Sbjct: 508 QFEQLLRTQQAFTRLESSINEQLPMDFWTIDLREAALALATISGE 552


>07_03_0395 +
           17644813-17644921,17644961-17645084,17645545-17646268,
           17646971-17647219
          Length = 401

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = -2

Query: 460 AVQNTVAVMLLGLSGPQYVPTSMFPFAERWNQP 362
           AV+  V+ M++  SGP    TS+FPFA R  QP
Sbjct: 42  AVERCVSQMMI--SGPTMARTSLFPFARR-GQP 71


>11_06_0119 + 20321687-20323624
          Length = 645

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +3

Query: 324 NQPLELWWSWRLTG*FHLSANGNILVGTY 410
           NQPL   W W LT   +L    NIL G +
Sbjct: 252 NQPLASCWFWNLTSLTYLDLIMNILPGQF 280


>02_02_0157 -
           7280335-7280541,7280656-7280762,7280918-7281097,
           7281182-7281277,7281378-7281459,7281553-7283037,
           7283376-7283450,7283521-7283598,7283708-7283791,
           7283885-7283965,7284073-7284291,7284398-7284648,
           7284748-7284796
          Length = 997

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 436 LQQQYSVQLENKLRERDTYWEQKIEELKLSL 528
           L + +S QLE K  +     EQ+IEE+KL L
Sbjct: 704 LHEAHSQQLETKAAQVSKELEQRIEEVKLML 734


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,851,177
Number of Sequences: 37544
Number of extensions: 231476
Number of successful extensions: 638
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)