Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9m10
         (671 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    24   1.1  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    24   1.1  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    24   1.1  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   3.5  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   8.1  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -1

Query: 410 VRSDKYVSICGEMESAGESPRPPELEG 330
           +R +++  I   M++A E+P PP + G
Sbjct: 313 MRKNRFQKIAESMKTARENPGPPGVPG 339


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -1

Query: 410 VRSDKYVSICGEMESAGESPRPPELEG 330
           +R +++  I   M++A E+P PP + G
Sbjct: 313 MRKNRFQKIAESMKTARENPGPPGVPG 339


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -1

Query: 410 VRSDKYVSICGEMESAGESPRPPELEG 330
           +R +++  I   M++A E+P PP + G
Sbjct: 252 MRKNRFQKIAESMKTARENPGPPGVPG 278


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 627 FS*VAFVCSPYSLGLGRTSYSLSCCCFFTLN 535
           F  V+ V  P+SL +  T +  SC  ++ LN
Sbjct: 47  FKTVSKVPGPFSLPIFGTRWIFSCIGYYKLN 77


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 349 DHQSSRGWLLTNHL 308
           D ++SR W +TN+L
Sbjct: 212 DFRNSRSWRITNNL 225


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,469
Number of Sequences: 438
Number of extensions: 2672
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)