Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt9m05
(730 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy... 42 9e-05
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb... 40 5e-04
SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom... 28 1.6
SPAC1705.03c ||SPAC23H4.19|conserved fungal family|Schizosacchar... 27 2.7
SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr 1||... 26 4.8
SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharom... 26 4.8
SPAC2E1P5.02c |mug109||sequence orphan|Schizosaccharomyces pombe... 26 4.8
SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 6.3
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 26 6.3
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ... 26 6.3
SPBC18E5.13 ||SPBC23G7.03|translation initiation factor |Schizos... 26 6.3
SPBC17D1.02 |||diphthamide biosynthesis protein |Schizosaccharom... 26 6.3
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb... 25 8.4
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 8.4
SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit... 25 8.4
>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 656
Score = 41.9 bits (94), Expect = 9e-05
Identities = 37/159 (23%), Positives = 77/159 (48%), Gaps = 2/159 (1%)
Frame = +2
Query: 260 NTSSFGALAHLLKASLGSGVLAMPLAFKNAGLLVGCIGTMLIGLICGHVIHILVKTSQQL 439
N S+ A+ LLK+ +G+GVL +P AFK GL+ +++G++ H+ +L+ +
Sbjct: 274 NASNGKAVLLLLKSFVGTGVLFLPKAFKLGGLVFSSATLLIVGVL-SHICFLLL-----I 327
Query: 440 CVEVKKPALGYADTCEIVFQNGPKPIRKFASIARELVDWSLAVTHMGACCVYVVVIAESF 619
+K P + D ++ GP +FA +A S+ V+ +G Y+ +A +
Sbjct: 328 QTRMKVPG-SFGDIGGTLY--GPH--MRFAILA------SIVVSQIGFSSAYISFVASTL 376
Query: 620 RQV--SVEYGGPDWSVTAYCALTLIVLIPLTQINKLKYL 730
+ + ++ + + + +V +PL+ + K+ L
Sbjct: 377 QACVKVISTTHREYHLAVFIFIQFLVFVPLSLVRKISKL 415
>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 39.5 bits (88), Expect = 5e-04
Identities = 42/177 (23%), Positives = 74/177 (41%), Gaps = 6/177 (3%)
Frame = +2
Query: 218 MGPYVPANHRPMESNTSS---FGALAHLLKASLGSGVLAMPLAFKNAGLLVGCIGTMLIG 388
M Y P + P + + F ++ +L LG+G+L++P AF GLL GC+ T++
Sbjct: 1 MSGYSPLSSGPADVHIGKAGFFSSVINLANTILGAGILSLPNAFTKTGLLFGCL-TIVFS 59
Query: 389 LICGHVIHILVKTSQQLCVEVKKPALGYADTCEIVFQNGPKPIRKFASIARELVDWSLAV 568
+ V Q + + +A + F S+A + D S+AV
Sbjct: 60 AFASFLGLYFV---SQCAARLPRGKASFAAVAK----------HTFPSLA-VVFDASIAV 105
Query: 569 THMGACCVYVVVIAESFRQVSVEYG--GPDW-SVTAYCALTLIVLIPLTQINKLKYL 730
G Y+V++ + Q++ G P + + L VL PL+ + +L L
Sbjct: 106 KCFGVAVSYLVIVGDLMPQIAPSLGLSSPMFLRRQTWIVFALFVLTPLSFLKRLDSL 162
>SPAC1486.09 |||ribosome biogenesis protein Nob1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 27.9 bits (59), Expect = 1.6
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Frame = +2
Query: 491 VFQNGPKP--IRKFASIARELVDWS-LAVTHMGACCVYVVVIAESFRQVSVEYGGPDWSV 661
V Q PKP I+K + A++ D+S L+VT + ++A ++ ++ VE+ G DW +
Sbjct: 55 VIQRVPKPEFIKKVSEFAKQTGDYSSLSVTD-------IQILALTY-ELEVEFNGGDWRL 106
Query: 662 TAY 670
Y
Sbjct: 107 RKY 109
>SPAC1705.03c ||SPAC23H4.19|conserved fungal
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 27.1 bits (57), Expect = 2.7
Identities = 15/60 (25%), Positives = 26/60 (43%)
Frame = -2
Query: 714 FICVSGMRTISVRAQYAVTDQSGPPYSTETCLNDSAITTTYTQHAPI*VTANDQSTSSLA 535
F C + TIS + Y ++ + T SA TT+Y+ + +++ SS A
Sbjct: 341 FTCQGSVATISATSSYDLSSTVSATSGSATSATGSATTTSYSSDSSASSSSSSSHESSAA 400
>SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 335
Score = 26.2 bits (55), Expect = 4.8
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +1
Query: 16 TRTIECKVPMKNKPQENIKIFGISNSFNLLLDIEDGEDEAISS 144
T+ ++ ++ KN + I + ++LL +ED +EAI S
Sbjct: 6 TKELKDEIYQKNYTEHEILQNAYNGKLDILLPVEDASEEAIRS 48
>SPCC1795.04c |||20S proteasome component alpha
7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 253
Score = 26.2 bits (55), Expect = 4.8
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -2
Query: 726 YLSLFICVSGMRTISVRAQYAVTDQSGP 643
Y+ LF C S +R V + A D GP
Sbjct: 118 YVQLFTCYSSVRPFGVMSFVATYDSEGP 145
>SPAC2E1P5.02c |mug109||sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 163
Score = 26.2 bits (55), Expect = 4.8
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 647 PDWSVTAYCALTLIVLIPLTQINKL 721
P +S+ CA+TLIV++ L + +L
Sbjct: 112 PKYSIPGVCAVTLIVIMFLAPVGRL 136
>SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 317
Score = 25.8 bits (54), Expect = 6.3
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -3
Query: 581 LPYE*QPTTSPLVLWQSM 528
LPY PT+ P+V W S+
Sbjct: 280 LPYNPHPTSKPVVSWDSL 297
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 25.8 bits (54), Expect = 6.3
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 488 IVFQNGPKPIRKFASIARELVDWS 559
I+ Q+G ++KF + RELV++S
Sbjct: 740 IMLQSGDMRVKKFLELIRELVEFS 763
>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 615
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 341 KNAGLLVGCIGTMLIGLICGHVIHILVKTSQQLCVEV 451
+NA LL+ L+GLICG ++ LC+ V
Sbjct: 561 RNAKLLIAFTILFLVGLICGWRLNRFTMFIYYLCILV 597
>SPBC18E5.13 ||SPBC23G7.03|translation initiation factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +2
Query: 125 KTKPSAPPIQLVMDDNYSSKIELAYNGSREDMGPYVPANH 244
+ K + P+ + D+ SKI+L G +DM P + +H
Sbjct: 178 QNKKRSQPVSQEVRDSILSKIQLEIEGLGKDMKPPIVNSH 217
>SPBC17D1.02 |||diphthamide biosynthesis protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 503
Score = 25.8 bits (54), Expect = 6.3
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Frame = +2
Query: 521 KFASIARELVDWS---LAVTHMGACCVYVVVIAESFRQVSVEYG 643
K ASI LV+ + LA T+ G+CCV V V YG
Sbjct: 68 KVASILTNLVEANVQILADTNYGSCCVDEVAAEHMSADAIVHYG 111
>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
membrane proteins, ESCRT 0 complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 610
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/45 (22%), Positives = 23/45 (51%)
Frame = +2
Query: 533 IARELVDWSLAVTHMGACCVYVVVIAESFRQVSVEYGGPDWSVTA 667
I R + W+LAV + Y++ + ++ + E+ P ++T+
Sbjct: 115 ILRYIQSWALAVPDTNSPLSYIIHVYQNLKDGDYEFPEPSQNITS 159
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +2
Query: 290 LLKASLGSGVLAMPLAFKNAGLLVGCIGTMLIG 388
+LKAS+ S +L + F N+ + C+G ++ G
Sbjct: 3560 VLKASVNSALLTSWICFLNSIGAINCVGIVVSG 3592
>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 542
Score = 25.4 bits (53), Expect = 8.4
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +2
Query: 488 IVFQNGPKPIRKFASIARELVDWS 559
++F+ G K I+K + E +DW+
Sbjct: 439 VIFEAGQKAIKKLKRLMLERIDWT 462
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,257,574
Number of Sequences: 5004
Number of extensions: 73104
Number of successful extensions: 218
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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