Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9l07
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr 1|||...   220   1e-58
SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual      92   9e-20
SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual      60   2e-10
SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces pom...    26   4.9  
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce...    26   6.5  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    25   8.6  
SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy...    25   8.6  
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    25   8.6  

>SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 322

 Score =  220 bits (538), Expect = 1e-58
 Identities = 103/205 (50%), Positives = 140/205 (68%), Gaps = 1/205 (0%)
 Frame = +3

Query: 129 RGFKIALIQLSVGPDKSKNIAQAVKEIHLAKEKGAQLVALPECFNSPYGTKYFDEYAEEV 308
           R F+I L+QL+   DKS+N+  A  ++  A + G+ ++ LPE FNSPYGT YF++YAE +
Sbjct: 42  RAFRIGLVQLANTKDKSENLQLARLKVLEAAKNGSNVIVLPEIFNSPYGTGYFNQYAEPI 101

Query: 309 PSGETS-RALSKXXXXXXXXXXXXXXPERYEKKLYNTCTVWDDTGKLLAQHRKMHLFDID 485
                S +ALS               PER + KLYNT  V+D +GKL+A HRK+HLFDID
Sbjct: 102 EESSPSYQALSSMAKDTKTYLFGGSIPERKDGKLYNTAMVFDPSGKLIAVHRKIHLFDID 161

Query: 486 IPNKITFKESEVLSAGDKITSFDFLGSKIGIGICYDLRFPEMAHLMAKEGCSLLIYPGAF 665
           IP  ++F+ES+ LS GD +T  D    K G+GICYD+RFPE+A + A+ GCS++IYPGAF
Sbjct: 162 IPGGVSFRESDSLSPGDAMTMVDTEYGKFGLGICYDIRFPELAMIAARNGCSVMIYPGAF 221

Query: 666 NMTTGPRHWELLGXARATDQQLWVA 740
           N++TGP HWELL  ARA D +++VA
Sbjct: 222 NLSTGPLHWELLARARAVDNEMFVA 246


>SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 276

 Score = 91.9 bits (218), Expect = 9e-20
 Identities = 65/205 (31%), Positives = 96/205 (46%), Gaps = 7/205 (3%)
 Frame = +3

Query: 144 ALIQLSVGPDKSKNIAQAVKEIHLAKEKGAQLVALPECFNSPYGTKYFDEYAEEVPSGET 323
           A+ QL+      KN+A   + I  A  KGA+ +  PE   S +     DE  E     + 
Sbjct: 5   AVAQLNSSGSILKNLAICKELISQAAAKGAKCIFFPEA--SDFIAHNSDEAIELTNHPDC 62

Query: 324 SRAL----SKXXXXXXXXXXXXXXPERYEKKLYNTCTVWDDT-GKLLAQHRKMHLFDIDI 488
           S+ +                    P + + KL N+    +   G++++++ K HLFD++I
Sbjct: 63  SKFIRDVRESATKHSIFVNICVHEPSKVKNKLLNSSLFIEPLHGEIISRYSKAHLFDVEI 122

Query: 489 PNKITFKESEVLSAGDKITS--FDFLGSKIGIGICYDLRFPEMAHLMAKEGCSLLIYPGA 662
            N  T KES     G+ I       LG K+G  IC+D+RFPE A  +   G  ++ YP A
Sbjct: 123 KNGPTLKESNTTLRGEAILPPCKTPLG-KVGSAICFDIRFPEQAIKLRNMGAHIITYPSA 181

Query: 663 FNMTTGPRHWELLGXARATDQQLWV 737
           F   TG  HWE+L  ARA D Q +V
Sbjct: 182 FTEKTGAAHWEVLLRARALDSQCYV 206


>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 272

 Score = 60.5 bits (140), Expect = 2e-10
 Identities = 54/199 (27%), Positives = 85/199 (42%), Gaps = 7/199 (3%)
 Frame = +3

Query: 141 IALIQLSVGP-DKSKNIAQAVKEIHLAKEKG--AQLVALPECFNSPYGT-KYFDEYAEEV 308
           IA +Q++    D   N+ +    +H   E      L+  PE   S Y     F + AE  
Sbjct: 5   IACVQMAPKVCDVKHNLQKMSSYVHEVMESNPSTNLILFPELITSGYECGNTFTQIAEIA 64

Query: 309 PSGETSRALSKXXXXXXXXXXXXXXPERYEKK---LYNTCTVWDDTGKLLAQHRKMHLFD 479
             G + + +S               PE+ EK+   +YN+C    + G L   +RK+HLFD
Sbjct: 65  GEGPSFKTMSNLAAKYHVNIIYGF-PEKEEKQSNIIYNSCIYITENGNLGGVYRKVHLFD 123

Query: 480 IDIPNKITFKESEVLSAGDKITSFDFLGSKIGIGICYDLRFPEMAHLMAKEGCSLLIYPG 659
            +  +   FK+      G     F+    K+G+ IC+D  FPE+A + A  G  LL+   
Sbjct: 124 TERKH---FKK------GSDFPIFETSFGKLGVMICWDTAFPEVARIHALNGADLLVVAT 174

Query: 660 AFNMTTGPRHWELLGXARA 716
            +        W+L+  ARA
Sbjct: 175 NWENPYSD-DWDLVTKARA 192


>SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 280 SILMNMQRKCHRGRRAELYPKPLQKLECA*LEVP 381
           S L N+     R +RA +    +QKL C  L+ P
Sbjct: 356 STLRNLAASSERNKRAIIEANAIQKLRCLILDAP 389


>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 604

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = -2

Query: 547 DVILSPAERTSDSLN-VILLGMSMSKRCI-FLCCAKSFPVSSQTVQVLYNFFSYLSG 383
           DV +S A  +  +L+ VI +   +S R +  L C    P    TVQV   F  Y+SG
Sbjct: 175 DVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLRCVVIVPTRELTVQVAKTFEYYMSG 231


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1016

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
 Frame = +3

Query: 261  NSPYGTKYFD-EYAEEVP 311
            NSP  TKYFD E+  E+P
Sbjct: 964  NSPTDTKYFDEEFTRELP 981


>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 516

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +1

Query: 532 AIRSHRSTFWDQRLASAYVTI*GSLRWH 615
           +I  H  T WD  +  A VT   SL WH
Sbjct: 322 SILEHEPTNWDDWVQEADVTDIDSLPWH 349


>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +3

Query: 156 LSVGPDKSKNIAQAVKEIHLAKEKGAQLVALPECFNSPYGTKYFD 290
           L  G D  +++    K   ++K+   Q  A P   N+P  T+ FD
Sbjct: 275 LENGSDLKRSLGHNQKSDRVSKDVSPQHQANPSTLNNPLKTQNFD 319


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,116,447
Number of Sequences: 5004
Number of extensions: 66254
Number of successful extensions: 176
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)