Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt9l07
(743 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0535 + 4006284-4006418,4006483-4006599,4007363-4007587,400... 204 8e-53
06_01_0729 + 5367796-5368071,5368390-5368483,5368708-5368782,536... 140 1e-33
12_02_0453 + 19192060-19192301,19192477-19192559,19193246-191933... 107 9e-24
02_04_0096 + 19669428-19669525,19670770-19670818,19671041-196711... 60 2e-09
07_03_0405 - 17767303-17767665,17767815-17768039,17768115-177683... 37 0.015
02_05_0058 + 25478274-25478421,25478963-25479142,25479714-254800... 36 0.026
03_06_0668 + 35412258-35412527,35412635-35412728,35412853-354129... 29 5.2
04_01_0069 - 697811-697876,697956-698166,698265-698359,698448-69... 28 6.8
02_05_0060 + 25484349-25484496,25485514-25485705,25486614-254869... 28 9.0
>03_01_0535 +
4006284-4006418,4006483-4006599,4007363-4007587,
4008112-4008205,4008587-4008661,4009045-4009123,
4009385-4009400,4009441-4009584,4009822-4009904,
4010012-4010093
Length = 349
Score = 204 bits (497), Expect = 8e-53
Identities = 105/202 (51%), Positives = 128/202 (63%), Gaps = 4/202 (1%)
Frame = +3
Query: 135 FKIALIQLSVGPDKSKNIAQAVKEIHLAKEKGAQLVALPECFNSPYGTKYFDEYAEEVPS 314
FK+AL QLSV DK++NIA+A + I A GA+LV LPE +N PY F EYAE++ +
Sbjct: 46 FKVALCQLSVTADKARNIARAREAIEAAAAGGAKLVLLPEIWNGPYSNDSFPEYAEDIEA 105
Query: 315 GETSRA----LSKXXXXXXXXXXXXXXPERYEKKLYNTCTVWDDTGKLLAQHRKMHLFDI 482
G + +S+ ER KLYNTC V+ G+L +HRK+HLFDI
Sbjct: 106 GGDAAPSFSMMSEVARSLQITLVGGSISERSGNKLYNTCCVFGSDGELKGKHRKIHLFDI 165
Query: 483 DIPNKITFKESEVLSAGDKITSFDFLGSKIGIGICYDLRFPEMAHLMAKEGCSLLIYPGA 662
DIP KITFKES+ L+AG +T D +IGIGICYD+RF E+A L A G LL YPGA
Sbjct: 166 DIPGKITFKESKTLTAGQDLTVVDTDVGRIGIGICYDIRFQELAMLYAARGAHLLCYPGA 225
Query: 663 FNMTTGPRHWELLGXARATDQQ 728
FNMTTGP HWELL ARA D Q
Sbjct: 226 FNMTTGPLHWELLQRARAADNQ 247
>06_01_0729 +
5367796-5368071,5368390-5368483,5368708-5368782,
5368919-5368997,5369155-5369170,5369260-5369346,
5369451-5369533,5369616-5369769
Length = 287
Score = 140 bits (338), Expect = 1e-33
Identities = 69/168 (41%), Positives = 97/168 (57%), Gaps = 2/168 (1%)
Frame = +3
Query: 240 VALPECFNSPYGTKYFDEYAEEVPSGETSRA--LSKXXXXXXXXXXXXXXPERYEKKLYN 413
V E +N PY + + E++ G + LS+ PER +L+N
Sbjct: 16 VLFQEIWNCPYSMETLPSHGEDIDGGASPSVSMLSEVAARRRITIVGGSIPERSSGRLFN 75
Query: 414 TCTVWDDTGKLLAQHRKMHLFDIDIPNKITFKESEVLSAGDKITSFDFLGSKIGIGICYD 593
TC V G++ A+HRK+HLF+IDIP ITF+ES+ +AG + T D +IGIGIC+D
Sbjct: 76 TCCVIGPDGQIKAKHRKLHLFEIDIPGDITFRESDTFTAGQEPTIVDTDVGRIGIGICHD 135
Query: 594 LRFPEMAHLMAKEGCSLLIYPGAFNMTTGPRHWELLGXARATDQQLWV 737
+RFPE+A L G L+ YP AFNM+TG W+L+ +RA D QL+V
Sbjct: 136 IRFPELAMLYRSRGAHLICYPSAFNMSTGQLLWDLMQKSRAVDNQLFV 183
>12_02_0453 +
19192060-19192301,19192477-19192559,19193246-19193328,
19193616-19193668,19194041-19194169,19194585-19194643,
19195317-19195429,19195571-19195663,19195810-19195912,
19196233-19196315,19196407-19196448
Length = 360
Score = 107 bits (257), Expect = 9e-24
Identities = 47/111 (42%), Positives = 71/111 (63%), Gaps = 1/111 (0%)
Frame = +3
Query: 408 YNTCTVWDDTGKLLAQHRKMHLFDIDIPNKITFKESEVLSAGDKITSFDFLGSKIGIGIC 587
YNT + DD+G++ + +RK+HLFD+D+P + +KES +AGD + + D ++G+ +C
Sbjct: 176 YNTHVLIDDSGEIRSSYRKIHLFDVDVPGNMVYKESRFTTAGDTVVAVDSPFGRLGLTVC 235
Query: 588 YDLRFPEMAH-LMAKEGCSLLIYPGAFNMTTGPRHWELLGXARATDQQLWV 737
YDLRFPE+ L K +L+ P AF TG HWE+L ARA + Q +V
Sbjct: 236 YDLRFPELYQCLRFKHQAQVLLVPSAFTKVTGEAHWEILLRARAIETQCYV 286
>02_04_0096 +
19669428-19669525,19670770-19670818,19671041-19671132,
19671235-19671386,19671478-19671524,19671617-19671650,
19671769-19671935,19672070-19672166,19672239-19672408
Length = 301
Score = 60.1 bits (139), Expect = 2e-09
Identities = 48/178 (26%), Positives = 75/178 (42%), Gaps = 4/178 (2%)
Frame = +3
Query: 141 IALIQLSVGPDKSKNIAQAVKEIHLAKEKGAQLVALPECFNSPY--GTKYFDEYAEEVP- 311
+A +Q + +S+N+ A + I A +KGA +V + E F Y + D + P
Sbjct: 13 VAAVQFACTDVESENVDTAERLIREAHKKGANIVLVQELFEGQYFCQAQRLDFFQRAKPY 72
Query: 312 SGETSRALSKXXXXXXXXXXXXXXPERYEKKLYNTCTVWDDTGKLLAQHRKMHLFDIDIP 491
G + + E YN+ + D G L +RK H IP
Sbjct: 73 KGNPTIIRFQKLAKELEVVIPVSFFEEANNAHYNSVAIIDADGTDLGLYRKSH-----IP 127
Query: 492 NKITFKESEVLSAGDK-ITSFDFLGSKIGIGICYDLRFPEMAHLMAKEGCSLLIYPGA 662
+ ++E + GD +F + IG+GIC+D FPE A M +G +L YP A
Sbjct: 128 DGPGYQEKFYFNPGDTGFKAFKTKYATIGVGICWDQWFPECARAMVLQGAEILFYPTA 185
>07_03_0405 -
17767303-17767665,17767815-17768039,17768115-17768342,
17768607-17768621,17768622-17768810,17769106-17769213,
17769917-17770045
Length = 418
Score = 37.1 bits (82), Expect = 0.015
Identities = 50/202 (24%), Positives = 80/202 (39%), Gaps = 16/202 (7%)
Frame = +3
Query: 105 LKQATMLKRGF---KIALIQLSVGPDKSKNIAQAVKE-IHLAKEKGAQLVALP-----EC 257
L+Q +++ G IA+ S D+ K I + VK I A + G ++ L E
Sbjct: 90 LRQPRVIRVGLIQNSIAIPTTSHFADQKKAIMEKVKPMIDAAGDAGVNILCLQVSQLSEA 149
Query: 258 FNSPYG----TKYFDEYAEEVPSGETSRALSKXXXXXXXXXXXXXXPE--RYEKKLYNTC 419
+ P+ K + E+AE V GE+++ L + + + ++NT
Sbjct: 150 WTMPFAFCTREKRWCEFAEPV-DGESTQFLQQLAKKYNMVIVSPILERDVNHGEIVWNTA 208
Query: 420 TVWDDTGKLLAQHRKMHLFDIDIPNKITFKESEVLSAGDK-ITSFDFLGSKIGIGICYDL 596
V + G ++ HRK H IP F ES G+ F+ KIG+ ICY
Sbjct: 209 VVIGNHGNIIGIHRKNH-----IPRVGDFNESTYYMEGNTGHPVFETAYGKIGVNICYGR 263
Query: 597 RFPEMAHLMAKEGCSLLIYPGA 662
P G ++ P A
Sbjct: 264 HHPLNWLAFGLNGAEIVFNPSA 285
>02_05_0058 +
25478274-25478421,25478963-25479142,25479714-25480007,
25480261-25480564,25480672-25480751,25480765-25480934
Length = 391
Score = 36.3 bits (80), Expect = 0.026
Identities = 28/92 (30%), Positives = 40/92 (43%)
Frame = +3
Query: 387 ERYEKKLYNTCTVWDDTGKLLAQHRKMHLFDIDIPNKITFKESEVLSAGDKITSFDFLGS 566
ER LYNT +D GK L +HRK+ +P + + G I +D
Sbjct: 133 ERVGYTLYNTVLFFDPLGKYLGKHRKV------MPTGLE-RVFWGFGDGSTIPVYDTPIG 185
Query: 567 KIGIGICYDLRFPEMAHLMAKEGCSLLIYPGA 662
KIG IC++ R P + M +G + P A
Sbjct: 186 KIGAVICWENRMPLLRTAMYAKGVQIYCAPTA 217
>03_06_0668 +
35412258-35412527,35412635-35412728,35412853-35412968,
35414877-35414921,35415471-35415680
Length = 244
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 330 LCSSPPMALPLHIHQNTWFRKES*ST 253
+C SPP LPL H+ FR E+ T
Sbjct: 18 MCCSPPAFLPLRAHRRRIFRAEAMKT 43
>04_01_0069 -
697811-697876,697956-698166,698265-698359,698448-698513,
698595-698643,698720-698770,698856-698908,699263-699331,
699874-699928,700011-700099,700217-700302,700376-700432,
700575-700716,701637-702032
Length = 494
Score = 28.3 bits (60), Expect = 6.8
Identities = 25/74 (33%), Positives = 28/74 (37%)
Frame = -3
Query: 738 PPTAAGR*HAPSPAAPNAGDRSSC*TPPDR*GENNLPWPSDVPSQGTSDRNICRCQSLIP 559
PP A AP+PA P R S PP P P P + + R S IP
Sbjct: 8 PPRPAPTPPAPAPAPPQVFLRRSVLPPP--------PAPHHAPPPPGAHVHYFRAASPIP 59
Query: 558 KSRTM*SYRPQREP 517
R S RP R P
Sbjct: 60 IFRAAASSRPPRPP 73
>02_05_0060 +
25484349-25484496,25485514-25485705,25486614-25486907,
25487140-25487421,25487571-25487743
Length = 362
Score = 27.9 bits (59), Expect = 9.0
Identities = 32/133 (24%), Positives = 54/133 (40%), Gaps = 3/133 (2%)
Frame = +3
Query: 273 GTKYFDEY---AEEVPSGETSRALSKXXXXXXXXXXXXXXPERYEKKLYNTCTVWDDTGK 443
G + F +Y A EVP E +R + E Y LY + +D G+
Sbjct: 98 GKEEFRKYHAAAIEVPGPEVTRLAAMAGKYKVFLVMGVIEREGYT--LYCSVLFFDPLGR 155
Query: 444 LLAQHRKMHLFDIDIPNKITFKESEVLSAGDKITSFDFLGSKIGIGICYDLRFPEMAHLM 623
L +HRK+ ++ +I + + G I +D KIG IC++ + P + +
Sbjct: 156 YLGKHRKLMPTALE---RIIWGFGD----GSTIPVYDTPLGKIGALICWENKMPLLRTAL 208
Query: 624 AKEGCSLLIYPGA 662
+G + P A
Sbjct: 209 YGKGIEIYCAPTA 221
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,973,670
Number of Sequences: 37544
Number of extensions: 473045
Number of successful extensions: 1063
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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