Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9l03
         (672 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1015 + 23307700-23307906,23309274-23309483,23309915-233100...   227   8e-60
04_04_1339 + 32760424-32760584,32762428-32764462                       33   0.27 
01_07_0231 + 42176598-42178117,42178232-42179753                       32   0.48 
11_04_0457 + 17916177-17916526,17917397-17917523,17917887-179182...    28   7.8  
08_02_0873 + 22100124-22100810                                         28   7.8  
01_06_0529 - 30026101-30026277,30026363-30026438,30026509-300265...    28   7.8  

>07_03_1015 +
           23307700-23307906,23309274-23309483,23309915-23310085,
           23310163-23310286,23310753-23310814,23311185-23311266,
           23311870-23312009
          Length = 331

 Score =  227 bits (554), Expect = 8e-60
 Identities = 104/165 (63%), Positives = 126/165 (76%)
 Frame = +3

Query: 171 LILTSETKVIVQGFTGKQGTFHSQQALDYGTKVVGGVSPKKAGTEHLGKPVFGTVKEAKA 350
           + +   T+VI QG TGK GTFH++QA++YGT +VGGV+PKK GTEHLG PVF +V EAKA
Sbjct: 37  VFVDKSTRVICQGITGKNGTFHTEQAIEYGTTMVGGVTPKKGGTEHLGLPVFNSVAEAKA 96

Query: 351 GTGATASVIYVPPPGXXXXXXXXXXXXMPLIVCITEGVPQHDMVRVKHALLRQNKSRLVG 530
            T A ASVIYVPPP             + L+VCITEG+PQHDMV+VK AL +Q+K+RL+G
Sbjct: 97  ETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVKVKAALNKQSKTRLIG 156

Query: 531 PNCPGIIAPEKCKIGIMPAAVHKRGCIGVVSRSGTLTYEACHQTT 665
           PNCPGII P +CKIGIMP  +HK G +G+VSRSGTLTYEA  QTT
Sbjct: 157 PNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTT 201


>04_04_1339 + 32760424-32760584,32762428-32764462
          Length = 731

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 18/47 (38%), Positives = 26/47 (55%)
 Frame = +3

Query: 33  FPFRRFTFNNSTMAMPVRVLSKFKDGLKLGNVRFASGNPYAETRKNL 173
           F  RR   N ST  M V +L    DGL  G++  A+G P+A+ ++ L
Sbjct: 550 FGGRRHELNVSTYQMCVLMLFNSADGLTYGDIEQATGIPHADLKRCL 596


>01_07_0231 + 42176598-42178117,42178232-42179753
          Length = 1013

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 24/78 (30%), Positives = 32/78 (41%)
 Frame = +3

Query: 141 GNPYAETRKNLILTSETKVIVQGFTGKQGTFHSQQALDYGTKVVGGVSPKKAGTEHLGKP 320
           G    E     I++S TK      TGK  TF    +L      VGG     +    +G+ 
Sbjct: 672 GTTTPEKELESIVSSSTKSSKLA-TGKMVTFGPGNSLR-SEDFVGGADALLSKATEIGRG 729

Query: 321 VFGTVKEAKAGTGATASV 374
           VFGTV  A  G G   ++
Sbjct: 730 VFGTVYRASVGEGRVVAI 747


>11_04_0457 +
           17916177-17916526,17917397-17917523,17917887-17918287,
           17918496-17918704,17919328-17919449,17920437-17920562,
           17920675-17920801,17920945-17921000
          Length = 505

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 556 GAMIPGQLGPTSLDLFCLKRACFTRTISCCGTP 458
           G+  P   G TSLD+ C +   +T  +S  G P
Sbjct: 106 GSSRPAAYGSTSLDMLCDRTIDYTEQLSVMGKP 138


>08_02_0873 + 22100124-22100810
          Length = 228

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 519 RLVGPNCPGIIAPEKCKIGIMPAAVHKRGC 608
           R   P+C G + PE C+ G +P  V +R C
Sbjct: 77  RCPDPSCGGALDPELCR-GALPGDVFERWC 105


>01_06_0529 -
           30026101-30026277,30026363-30026438,30026509-30026570,
           30026882-30027031,30027213-30027338,30028096-30028305,
           30028870-30028938,30029024-30029080,30029131-30029277,
           30029358-30029542,30029623-30029698,30029796-30029918,
           30030395-30030410,30031743-30032745,30033521-30033789,
           30034297-30034415
          Length = 954

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 435 PLIVCITEGVPQHDMVRVKHALLR 506
           PL+ CIT  VPQ  +  ++HA+ +
Sbjct: 757 PLVACITRLVPQKGLHLIRHAIYK 780


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,080,121
Number of Sequences: 37544
Number of extensions: 412667
Number of successful extensions: 1070
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)