Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9k24
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|...    38   0.001
SPAC22F3.02 |atf31||transcription factor Atf31|Schizosaccharomyc...    30   0.27 
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce...    30   0.36 
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce...    29   0.63 
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos...    29   0.63 
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    28   1.5  
SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15 |Schizosac...    28   1.5  
SPAC664.08c |||traub transciption factor family protein |Schizos...    28   1.5  
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   1.9  
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    27   2.5  
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    26   4.4  
SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces...    26   4.4  
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    25   7.8  
SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom...    25   7.8  
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   7.8  
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    25   7.8  

>SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 201

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 18/56 (32%), Positives = 35/56 (62%)
 Frame = +3

Query: 387 RREAHTQAEQKRRDAIKKGYDSLQDLVPTCQQSDASGYKPSKAAVLQKSIDYIQYL 554
           +R +H + E++RR+AI +G   L ++VP C++        +K ++LQ++  YI+ L
Sbjct: 89  KRLSHKEVERRRREAISEGIKELANIVPGCEK--------NKGSILQRTAQYIRSL 136


>SPAC22F3.02 |atf31||transcription factor Atf31|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 209

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = +3

Query: 309 SSSNQNTEDEDDSGDNKASALSFKERR--REAHTQAEQKRRDAIKKGYDSLQDLV 467
           +S N  + + DDSGD   S L+  ++   +  + QA QK R   KK   +LQD V
Sbjct: 99  ASHNSPSRELDDSGDENTSKLTGTKQSMLKARNRQAAQKCRIKKKKYLQTLQDQV 153


>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1067

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +3

Query: 306 PSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQDLVP 470
           PS+  +  +D DD   N  S+ S K   + + TQA + + D  + G +  +D +P
Sbjct: 87  PSTDKKKKKDNDDFKQNLKSS-SNKTEEKYSATQASKSKNDEFELGGEENEDEMP 140


>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 563

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +3

Query: 273 SSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRD 428
           S+G+   + QTP+S  +N EDE+            K  RR    Q ++K+ D
Sbjct: 44  STGTESEVIQTPTSVEENNEDENSMSTTTIEIPVVK--RRNLRNQKKKKKTD 93


>SPAC222.06 |mak16||nuclear HMG-like acidic protein
           Mak16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
 Frame = +3

Query: 270 GSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYD 449
           GS  S++        S+++  DED+  DNK      ++R+ +   ++ +KR   I   Y+
Sbjct: 231 GSDQSMETSESEEEESSESESDEDEDEDNKG---KIRKRKTDDAKKSRKKRAPHIHIEYE 287

Query: 450 SLQ--DLVPTCQQS 485
             +  + +P  Q S
Sbjct: 288 QERENEKIPAVQHS 301


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = +3

Query: 297  HQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQ---KRRDAIKKGYDSLQ 458
            +  P   N +T DED S   + S+       REA++ A +   +RR      +DSL+
Sbjct: 974  YSNPDDKNTSTSDEDTSESEEESSNGLFSLAREANSHASKSLPQRRQIQFLDFDSLK 1030


>SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 265

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +3

Query: 288 QNIHQTPSSSNQNTEDEDDSGD--NKASALSFKERRREAHTQ 407
           Q + +    ++++  D DDS D  NK S +S K R+ E+++Q
Sbjct: 105 QELLRQTLEADEDASDSDDSVDSSNKNSEVSIKRRKTESNSQ 146


>SPAC664.08c |||traub transciption factor family protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 452

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 11/83 (13%)
 Frame = +3

Query: 273 SSGSIQNIHQTPSSSNQNTEDEDDS--------GDNKASALSFKERRREAHTQAEQKRRD 428
           +SGS+ +   +PS    + EDE+D+          ++AS++S +    +  +   +K  D
Sbjct: 81  NSGSLNSQSSSPSEEEDSEEDENDAVSEDHENFSSSEASSISEENEDDDQSSAIPEKDMD 140

Query: 429 AIKK---GYDSLQDLVPTCQQSD 488
            +KK   G   L D + T    D
Sbjct: 141 RLKKIINGEKKLSDQIRTSALED 163


>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +3

Query: 222 LKFHYNN*YPNMYPRCGSSGSIQNIHQTPSSSNQNTEDEDDSGDN 356
           L FH         P       + + + T SS N  ++ EDDSG++
Sbjct: 40  LPFHREREKVESNPNSSDEEDLTSTNNTRSSDNTTSDTEDDSGED 84


>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 20/64 (31%), Positives = 31/64 (48%)
 Frame = +3

Query: 324 NTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQDLVPTCQQSDASGYK 503
           N ++ D+S   K   L  KER  E     E++RRD  +K +D+  D +   ++   SG  
Sbjct: 303 NAKELDESRRKKIELLEKKERDEEQF--LEKERRDTARK-WDNQGDFIRNMRKEIYSGDS 359

Query: 504 PSKA 515
            S A
Sbjct: 360 VSLA 363


>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 297 HQTPSSSNQNTEDEDDSGDNKASALS 374
           + TP S  +  ED+D +G NK +A S
Sbjct: 365 NNTPMSEKRKREDDDANGPNKFAARS 390


>SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 446

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = +3

Query: 270 GSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRD 428
           G SG +  +      S+ ++++ D+  D+    LS  ERR     + +QK++D
Sbjct: 378 GYSGYVAGLSSRDPDSDFDSDNVDEYIDDHKRGLSSTERRDLDRVRDKQKKQD 430


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +3

Query: 387 RREAHTQAEQKRRDAIKKGYDSLQDLVPTCQQSDASGYKPSKAAVLQ 527
           +R AH   E++ R  +      L+D VPT +    SGY  + A  L+
Sbjct: 427 KRSAHNMIEKRYRSNLNDKIAELRDAVPTLR----SGYNSTTADELK 469


>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 375 FKERRREAHTQAEQKRRDAIKKGYDSLQDLV 467
           +KE  R  HT   +  ++A++K  D L  LV
Sbjct: 4   YKELARRLHTLQSKNEKEALEKQIDFLDKLV 34


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +3

Query: 246 YPNMYPRCGSSGSIQNIHQTPSSSNQNTEDEDDSGD 353
           YP +  +  SS       +T S +++NT+++ D  D
Sbjct: 716 YPEILEKLSSSSGSDEFLETSSRTSENTKEKIDKDD 751


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/63 (23%), Positives = 27/63 (42%)
 Frame = +3

Query: 264 RCGSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKG 443
           R  SS  I +   TPSSS+ ++     S  +K+S+ S       + +++      + K  
Sbjct: 140 RTSSSYFITSSSSTPSSSSSSSSSSPSSSSSKSSSSSKSSSSSSSSSKSSSSSSSSSKSS 199

Query: 444 YDS 452
             S
Sbjct: 200 SSS 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,703,903
Number of Sequences: 5004
Number of extensions: 54448
Number of successful extensions: 216
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)