Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9k24
         (688 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             27   0.22 
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               23   2.7  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   2.7  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   4.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   4.8  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    21   8.3  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    21   8.3  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    21   8.3  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 26.6 bits (56), Expect = 0.22
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 303  TPSS-SNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRD 428
            TP S S   + DED + D  ++ L    R RE H   +Q+ RD
Sbjct: 1399 TPLSISRAGSRDEDSTRD--STKLDRSSREREVHNGGQQEDRD 1439


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 309 SSSNQNTEDEDDSGDN 356
           S++N NT  E++S DN
Sbjct: 135 SNANSNTTSEEESSDN 150


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 11/48 (22%), Positives = 22/48 (45%)
 Frame = +3

Query: 285 IQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRD 428
           I+N H   ++ N N ++ ++  DN       K  ++ A+ Q    + D
Sbjct: 409 IRNTHCVNNNQNDNIQNTNNQNDNNQ-----KNNKKNANNQKNNNQND 451


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/48 (20%), Positives = 21/48 (43%)
 Frame = +3

Query: 300 QTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKG 443
           Q  +  N N ++ +   DNK +     + ++  + Q   K+ D  + G
Sbjct: 460 QNDNRQNDNKQNGNRQNDNKQNGNRQNDNKQNGNRQNGNKQNDNKQNG 507


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 270 GSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFK 380
           G+SGS    + +  S+NQ +    ++  N  S  SFK
Sbjct: 599 GASGSGSAENLSSGSNNQTSSASRENTSNTTSMESFK 635


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 417 KRRDAIKKGYDSLQDLVPTCQQSDASGYKPSK 512
           K+R+ IKK    L +  P    S A+ Y P K
Sbjct: 82  KQREVIKKVIKFLVENKPELWDSLANKYDPDK 113


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 417 KRRDAIKKGYDSLQDLVPTCQQSDASGYKPSK 512
           K+R+ IKK    L +  P    S A+ Y P K
Sbjct: 82  KQREVIKKVIKFLVENKPELWDSLANKYDPDK 113


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 417 KRRDAIKKGYDSLQDLVPTCQQSDASGYKPSK 512
           K+R+ IKK    L +  P    S A+ Y P K
Sbjct: 82  KQREVIKKVIKFLVENKPELWDSLANKYDPDK 113


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,992
Number of Sequences: 438
Number of extensions: 3680
Number of successful extensions: 17
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)