Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9k21
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   1.4  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    27   1.8  
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    27   2.4  
SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp...    25   7.3  
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr...    25   9.7  

>SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 210

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +1

Query: 460 HSIAIS--TDNPITQQRLAIFEKVQKIISAAAAEQVNILCLQEAWNMPF 600
           HSI++   +   I+Q+ + I    QK+   A  + + + C+  AW +PF
Sbjct: 26  HSISLGYLSKEKISQEEMQIIRATQKL---ARTKYMTLYCIPRAWLIPF 71


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = -1

Query: 629  HGCFSLVQNAKGMFQA--SCKQRILTCSA 549
            +GCF+  QN KGM +A    ++R LTC +
Sbjct: 976  YGCFTDFQNVKGMSKAIFIVQRRALTCKS 1004


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 256 VISNSLKGKELEEFNRIHYGR 318
           V+ N+L  K LE+ NRI YG+
Sbjct: 747 VLQNTLVAKNLEQANRIAYGK 767


>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
           Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -3

Query: 408 CRKIISFY--FKSIASGFLGSNGTDKQSTLVYSSIVN 304
           C + IS     K  + GF G NG D+     Y+SI++
Sbjct: 78  CERAISSVRQLKGPSGGFCGGNGQDEHLLSTYASILS 114


>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 585

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -1

Query: 377 PLLAAFWAATELINKAHW 324
           P+ +A W++ EL++K +W
Sbjct: 319 PISSALWSSKELLSKDYW 336


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,579,936
Number of Sequences: 5004
Number of extensions: 50838
Number of successful extensions: 121
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)