Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9k21
         (659 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0405 - 17767303-17767665,17767815-17768039,17768115-177683...   116   2e-26
10_03_0007 - 6956215-6956223,6957082-6957300,6957874-6957978,695...    29   2.5  
10_08_0490 + 18279370-18279732,18280776-18280834,18281642-18282728     29   4.3  
06_03_1137 + 27903012-27904196,27904330-27904542,27905775-279058...    28   5.7  
04_03_0535 - 16850704-16853001,16854055-16854115,16854228-168543...    28   5.7  

>07_03_0405 -
           17767303-17767665,17767815-17768039,17768115-17768342,
           17768607-17768621,17768622-17768810,17769106-17769213,
           17769917-17770045
          Length = 418

 Score =  116 bits (278), Expect = 2e-26
 Identities = 64/146 (43%), Positives = 93/146 (63%), Gaps = 10/146 (6%)
 Frame = +1

Query: 244 SLDEVISNSLKGKELEEFNRIHYGRIDQCALFISSVAAQKAAS-----NGFEIKAYDFPA 408
           SL  ++ ++L  +  +E +R+  G    C   + +++  +A S     + F+++A+ F A
Sbjct: 28  SLHRLLQSNLSPELFKEASRLLLGL--NCGRALEAISLPEATSALAKAHNFDVQAFRFDA 85

Query: 409 RKEECRKPRIVRLGLIQHSIAISTDNPITQQRLAIFEKVQKIISAAAAEQVNILCLQ--- 579
            KE  R+PR++R+GLIQ+SIAI T +    Q+ AI EKV+ +I AA    VNILCLQ   
Sbjct: 86  DKEYLRQPRVIRVGLIQNSIAIPTTSHFADQKKAIMEKVKPMIDAAGDAGVNILCLQVSQ 145

Query: 580 --EAWNMPFAFCTREKQPWCDFAEPV 651
             EAW MPFAFCTREK+ WC+FAEPV
Sbjct: 146 LSEAWTMPFAFCTREKR-WCEFAEPV 170


>10_03_0007 -
           6956215-6956223,6957082-6957300,6957874-6957978,
           6958062-6958175,6958342-6958467,6958583-6958697,
           6958791-6958867,6958956-6959179,6959848-6959953,
           6960065-6960163,6960282-6960467,6960611-6960613
          Length = 460

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 493 TQQRLAIFEKVQKIISAAAAEQVNILCLQEAW 588
           +Q R   F + +KII    A+  +I+CLQE W
Sbjct: 68  SQYRAYWFSRNEKIIDRLLADCSSIICLQEVW 99


>10_08_0490 + 18279370-18279732,18280776-18280834,18281642-18282728
          Length = 502

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +3

Query: 522 GSKDHICCSCRAS*YSLFTRSL--EHALCILYKRKATMV*LC 641
           G + HICC C     +L+ R +  EHA C+   R  +   LC
Sbjct: 102 GERVHICCRCEFP-IALYGRLIPCEHAFCLACARSDSSCYLC 142


>06_03_1137 +
           27903012-27904196,27904330-27904542,27905775-27905867,
           27905940-27906008,27906412-27906612,27906688-27906834,
           27907524-27907652,27909001-27909131,27909240-27909333
          Length = 753

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +1

Query: 478 TDNPITQQRL-AIFEKVQKIISAAAAEQVNILCLQE 582
           T N     RL A  EK +K++SA A   VNI CL E
Sbjct: 260 TGNVKASMRLRAACEKAKKVLSANAEAVVNIECLME 295


>04_03_0535 - 16850704-16853001,16854055-16854115,16854228-16854323,
            16854394-16854521,16855016-16855067,16855182-16855274,
            16855473-16855590,16856456-16856609,16857512-16857643,
            16859136-16859216,16859353-16859507,16860118-16860343,
            16860423-16860507,16860593-16860689,16861785-16861949,
            16862046-16862121,16863041-16863103,16863193-16863359,
            16863495-16863669,16863743-16863835,16864694-16864810,
            16865589-16865778,16866092-16866126
          Length = 1618

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +1

Query: 304  IHYGRIDQCALFISSVAAQKAASNGFEIKAYDFPARKEECRK 429
            I  GR +   L  S +    + S    IKAY    R E+CR+
Sbjct: 1194 ISMGRTEDAKLVFSQMTEHDSGSYNLMIKAYADEGRLEDCRR 1235


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,350,113
Number of Sequences: 37544
Number of extensions: 283538
Number of successful extensions: 553
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)