Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9k21
         (659 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23139-15|AAK31488.1|  387|Caenorhabditis elegans Hypothetical p...   123   1e-28
AF022981-4|AAG24205.1|  602|Caenorhabditis elegans Hypothetical ...    29   2.2  
AL161712-13|CAC70137.1|  830|Caenorhabditis elegans Hypothetical...    28   5.1  
AC025716-3|AAK39618.1|  690|Caenorhabditis elegans Hypothetical ...    28   5.1  
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    27   8.9  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    27   8.9  

>U23139-15|AAK31488.1|  387|Caenorhabditis elegans Hypothetical
           protein F13H8.7 protein.
          Length = 387

 Score =  123 bits (297), Expect = 1e-28
 Identities = 63/144 (43%), Positives = 90/144 (62%)
 Frame = +1

Query: 226 ASAELTSLDEVISNSLKGKELEEFNRIHYGRIDQCALFISSVAAQKAASNGFEIKAYDFP 405
           A A+   ++  ++  L G  L+E  RI YGR  + AL ISS+A + A    F++  Y   
Sbjct: 4   APAQFDGVETALAEKLDGVSLDEVERILYGRPYR-ALEISSIAEKLAQDGDFQLSGYIVD 62

Query: 406 ARKEECRKPRIVRLGLIQHSIAISTDNPITQQRLAIFEKVQKIISAAAAEQVNILCLQEA 585
           A+KE+ R PR+VR+  IQ+ I   T + + +QR AI ++V  +I AAA+   N++ LQEA
Sbjct: 63  AQKEQTRAPRLVRVAAIQNKIHRPTTDSVVEQRDAIHQRVGAMIEAAASAGANVIGLQEA 122

Query: 586 WNMPFAFCTREKQPWCDFAEPVLT 657
           W MPFAFCTRE+ PW +FAE V T
Sbjct: 123 WTMPFAFCTRERLPWTEFAESVYT 146


>AF022981-4|AAG24205.1|  602|Caenorhabditis elegans Hypothetical
           protein W03F9.10 protein.
          Length = 602

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 26/90 (28%), Positives = 39/90 (43%)
 Frame = +1

Query: 250 DEVISNSLKGKELEEFNRIHYGRIDQCALFISSVAAQKAASNGFEIKAYDFPARKEECRK 429
           D+  + +L  KEL+E  R    +  +      S    KA     EI+  + P ++EE   
Sbjct: 10  DDEANKNLSKKELQELKR----KQQKSKKKKESKKRAKATKQA-EIETREEPKKEEENGD 64

Query: 430 PRIVRLGLIQHSIAISTDNPITQQRLAIFE 519
              V +  I  +I I  DNP  Q   AIF+
Sbjct: 65  DLDVEIDYIGETIEIEPDNPHAQYFSAIFD 94


>AL161712-13|CAC70137.1|  830|Caenorhabditis elegans Hypothetical
           protein Y66D12A.17 protein.
          Length = 830

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +1

Query: 403 PARKEECRKPRIVRL-GLIQHSIAISTDNPITQQRLAIFEKVQKIISA 543
           P +K + R  RIV L  L  H++   T  P+T  ++AIF+ ++ +  A
Sbjct: 2   PPKKAQTR--RIVSLDSLFGHTLLNITGEPVTPTKIAIFQLIRTLFHA 47


>AC025716-3|AAK39618.1|  690|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.10 protein.
          Length = 690

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 19/54 (35%), Positives = 24/54 (44%)
 Frame = +1

Query: 283 ELEEFNRIHYGRIDQCALFISSVAAQKAASNGFEIKAYDFPARKEECRKPRIVR 444
           ELE+ N  H    DQC+L +SS    + A    E K        EEC   R+ R
Sbjct: 475 ELEQSNAAHQSLRDQCSLLLSSEDDLRTAHLALESK---MTLVSEECIALRVSR 525


>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical
           protein F29D11.1 protein.
          Length = 4753

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 303 NSLWKNRPMCFVYQFRCCPKSR 368
           +S  +N   CF YQFRC  K++
Sbjct: 173 DSCSRNHTACFQYQFRCADKTQ 194


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL
           receptor-related protein protein.
          Length = 4753

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 303 NSLWKNRPMCFVYQFRCCPKSR 368
           +S  +N   CF YQFRC  K++
Sbjct: 173 DSCSRNHTACFQYQFRCADKTQ 194


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,087,704
Number of Sequences: 27780
Number of extensions: 280186
Number of successful extensions: 592
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)