Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9k17
         (119 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC584.14 |mug160||conserved eukaryotic protein|Schizosaccharom...    23   5.6  
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|...    23   7.4  

>SPCC584.14 |mug160||conserved eukaryotic
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 431

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -3

Query: 45  LVAVMLDIDQHPGW 4
           L++++ D D HP W
Sbjct: 135 LLSIIFDFDSHPDW 148


>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 542

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +2

Query: 14  CWSISSITATSNKIITKKYVV 76
           CW+IS+ITA ++  I  +YV+
Sbjct: 353 CWTISNITAGNSSQI--QYVI 371


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 446,810
Number of Sequences: 5004
Number of extensions: 4457
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 2,362,478
effective HSP length: 20
effective length of database: 2,262,398
effective search space used: 42985562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)