Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9k15
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.03c |bag102|bag1-b|BAG family molecular chaperone regula...    29   0.48 
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    28   1.1  
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual    27   1.9  
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi...    26   4.5  
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    26   5.9  
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   7.8  
SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.8  

>SPBC530.03c |bag102|bag1-b|BAG family molecular chaperone
           regulator|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 206

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +3

Query: 477 QDVGDDDTNLEENVLGQEVEDDGVLLSPYPRSRLKR 584
           QDV D  T L E +L + ++ D V +   P +RLKR
Sbjct: 149 QDVQDLHTRLSETLLARMIKLDAVNVEDDPEARLKR 184


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +3

Query: 261  VFVKMFRSKIRIHTCRIILLTSLAWLLVDVMLLAMYSD 374
            VF++M    I I +  +++LTSLAW L ++ +   Y D
Sbjct: 1435 VFIEM--QYINIISIIVLVLTSLAWFLFNIFISEHYPD 1470


>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 304

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 480 DVGDDDTNLEENVLGQEVEDDGVLLSPYPRSRLKRWQ 590
           D+G DDTN  E  + +    +  +LS     RLKR Q
Sbjct: 8   DIGKDDTNTSEADVSKNETQEQPVLSKSALKRLKRQQ 44


>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
           Usp107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/65 (24%), Positives = 24/65 (36%)
 Frame = +3

Query: 492 DDTNLEENVLGQEVEDDGVLLSPYPRSRLKRWQRAPSVIPQGESPGEMGKAVNIPIEQEK 671
           D  NL  N    E+++     +P         +  P V P  +    M    NIP E + 
Sbjct: 93  DRKNLPRNQKSNEIQEKQTFQTPSSEKSTTERESRPFVPPNSQQMRRMLFIGNIPKELDD 152

Query: 672 LMLDK 686
             +DK
Sbjct: 153 FWMDK 157


>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = +3

Query: 354 LLAMYSDCF-GDGCNQKTVTSE 416
           L + Y+ CF GDGC Q+ V+SE
Sbjct: 151 LFSNYTFCFLGDGCLQEGVSSE 172


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -3

Query: 362 SQQHN--VHQ*PSQGRQQDNTTRVNPYFTSEHFNEYTTGHWLLTISIQPN 219
           S QH+   H+   QG+ + +TT+   + T   + E++ G      S++PN
Sbjct: 129 SSQHDKAFHERVDQGKNKSSTTKYQEFRTVADYREFSPGQ--SVNSLKPN 176


>SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 340

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +3

Query: 234 NCQKPVTRGVFVKMFRSKIRIHTCRIILLTSLAWLLVD 347
           +C+    RG+  K F +K ++   R++ LT+   LLV+
Sbjct: 18  DCETVNFRGIAYKCFFTKDQVKGTRLVRLTNYLMLLVN 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,605,048
Number of Sequences: 5004
Number of extensions: 49730
Number of successful extensions: 106
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)