Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt9k15
(691 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L16621-14|AAA28224.3| 612|Caenorhabditis elegans Glycosylation ... 35 0.063
AF031833-1|AAC13669.1| 612|Caenorhabditis elegans GLY3 protein. 35 0.063
Z81122-11|CAB61031.1| 447|Caenorhabditis elegans Hypothetical p... 31 0.59
AF114440-1|AAD13294.1| 447|Caenorhabditis elegans delta5-fatty ... 31 0.59
AF078796-1|AAC95143.1| 447|Caenorhabditis elegans delta 5 fatty... 31 0.59
AC024790-1|AAK84609.1| 315|Caenorhabditis elegans Hypothetical ... 29 2.4
AF039038-5|AAK29711.1| 604|Caenorhabditis elegans Cell division... 29 3.1
Z82278-8|CAB05251.2| 312|Caenorhabditis elegans Hypothetical pr... 29 4.1
U41994-5|ABB88206.1| 163|Caenorhabditis elegans Hypothetical pr... 28 7.2
U23518-8|AAO38654.1| 400|Caenorhabditis elegans Nuclear hormone... 28 7.2
U23518-7|AAO38655.1| 440|Caenorhabditis elegans Nuclear hormone... 28 7.2
U23518-6|AAD31548.2| 446|Caenorhabditis elegans Nuclear hormone... 28 7.2
U23518-5|AAO38653.1| 448|Caenorhabditis elegans Nuclear hormone... 28 7.2
U23518-4|ABB88231.1| 450|Caenorhabditis elegans Nuclear hormone... 28 7.2
AF083234-1|AAD03692.1| 400|Caenorhabditis elegans nuclear recep... 28 7.2
AF083233-1|AAD03691.1| 458|Caenorhabditis elegans nuclear recep... 28 7.2
>L16621-14|AAA28224.3| 612|Caenorhabditis elegans Glycosylation
related protein 3 protein.
Length = 612
Score = 34.7 bits (76), Expect = 0.063
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 291 RIHTCRIILLTSLAWLLVDVMLLAMYSD 374
R CR ++ TS+ WLL+DV++L Y D
Sbjct: 8 RSAVCRAVIATSIVWLLIDVVILFYYLD 35
>AF031833-1|AAC13669.1| 612|Caenorhabditis elegans GLY3 protein.
Length = 612
Score = 34.7 bits (76), Expect = 0.063
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 291 RIHTCRIILLTSLAWLLVDVMLLAMYSD 374
R CR ++ TS+ WLL+DV++L Y D
Sbjct: 8 RSAVCRAVIATSIVWLLIDVVILFYYLD 35
>Z81122-11|CAB61031.1| 447|Caenorhabditis elegans Hypothetical
protein T13F2.1 protein.
Length = 447
Score = 31.5 bits (68), Expect = 0.59
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -3
Query: 359 QQHNVHQ*PSQGRQQDNTTRVNPYFTS--EHFNEYTTGHWLLTI 234
+QHNVH + +D + P++ + EH N Y+ W++T+
Sbjct: 206 EQHNVHHAATNVVGRDGDLDLVPFYATVAEHLNNYSQDSWVMTL 249
>AF114440-1|AAD13294.1| 447|Caenorhabditis elegans delta5-fatty
acid desaturase protein.
Length = 447
Score = 31.5 bits (68), Expect = 0.59
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -3
Query: 359 QQHNVHQ*PSQGRQQDNTTRVNPYFTS--EHFNEYTTGHWLLTI 234
+QHNVH + +D + P++ + EH N Y+ W++T+
Sbjct: 206 EQHNVHHAATNVVGRDGDLDLVPFYATVAEHLNNYSQDSWVMTL 249
>AF078796-1|AAC95143.1| 447|Caenorhabditis elegans delta 5 fatty
acid desaturase protein.
Length = 447
Score = 31.5 bits (68), Expect = 0.59
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -3
Query: 359 QQHNVHQ*PSQGRQQDNTTRVNPYFTS--EHFNEYTTGHWLLTI 234
+QHNVH + +D + P++ + EH N Y+ W++T+
Sbjct: 206 EQHNVHHAATNVVGRDGDLDLVPFYATVAEHLNNYSQDSWVMTL 249
>AC024790-1|AAK84609.1| 315|Caenorhabditis elegans Hypothetical
protein Y47D7A.3 protein.
Length = 315
Score = 29.5 bits (63), Expect = 2.4
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +1
Query: 337 YWWTLCCWL 363
YWW LCCW+
Sbjct: 100 YWWLLCCWI 108
>AF039038-5|AAK29711.1| 604|Caenorhabditis elegans Cell division
cycle related protein25.1 protein.
Length = 604
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +3
Query: 489 DDDTNLEENVLGQEVEDDGVLLSPYPRSRLKRWQRAP 599
DD+ + NV +V++ + P PR+ W AP
Sbjct: 190 DDEVFEQSNVRNSQVQNTSIFAQPAPRTATSLWDLAP 226
>Z82278-8|CAB05251.2| 312|Caenorhabditis elegans Hypothetical
protein M162.8 protein.
Length = 312
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +3
Query: 576 LKRWQRAPSVIPQGESPGEMGKAVNIPIEQ 665
L++W++A S+I + ES +NIPIEQ
Sbjct: 199 LEQWKQAKSIIIKPESYSTSHSYLNIPIEQ 228
>U41994-5|ABB88206.1| 163|Caenorhabditis elegans Hypothetical
protein F59A6.11 protein.
Length = 163
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -3
Query: 317 QDNTTRVNPYFTSEHFNEYTTGHWLLTISIQPNDTIT 207
+D+ T P SEH+ EY GHW S +P+D +T
Sbjct: 19 EDDDTCFCPDIRSEHYREY-GGHWQ---SEEPDDRLT 51
>U23518-8|AAO38654.1| 400|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 21, isoform b protein.
Length = 400
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1
Query: 301 RVVLSC*RPWLGYWWTLCCW 360
R+VL+ R YWW CCW
Sbjct: 226 RMVLAKSRFSFFYWWLTCCW 245
>U23518-7|AAO38655.1| 440|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 21, isoform c protein.
Length = 440
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1
Query: 301 RVVLSC*RPWLGYWWTLCCW 360
R+VL+ R YWW CCW
Sbjct: 266 RMVLAKSRFSFFYWWLTCCW 285
>U23518-6|AAD31548.2| 446|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 21, isoform d protein.
Length = 446
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1
Query: 301 RVVLSC*RPWLGYWWTLCCW 360
R+VL+ R YWW CCW
Sbjct: 272 RMVLAKSRFSFFYWWLTCCW 291
>U23518-5|AAO38653.1| 448|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 21, isoform a protein.
Length = 448
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1
Query: 301 RVVLSC*RPWLGYWWTLCCW 360
R+VL+ R YWW CCW
Sbjct: 272 RMVLAKSRFSFFYWWLTCCW 291
>U23518-4|ABB88231.1| 450|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 21, isoform e protein.
Length = 450
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1
Query: 301 RVVLSC*RPWLGYWWTLCCW 360
R+VL+ R YWW CCW
Sbjct: 274 RMVLAKSRFSFFYWWLTCCW 293
>AF083234-1|AAD03692.1| 400|Caenorhabditis elegans nuclear receptor
NHR-21b protein.
Length = 400
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1
Query: 301 RVVLSC*RPWLGYWWTLCCW 360
R+VL+ R YWW CCW
Sbjct: 226 RMVLAKSRFSFFYWWLTCCW 245
>AF083233-1|AAD03691.1| 458|Caenorhabditis elegans nuclear receptor
NHR-21a protein.
Length = 458
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1
Query: 301 RVVLSC*RPWLGYWWTLCCW 360
R+VL+ R YWW CCW
Sbjct: 284 RMVLAKSRFSFFYWWLTCCW 303
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,515,021
Number of Sequences: 27780
Number of extensions: 280542
Number of successful extensions: 669
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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