Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt9k14
(773 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 39 0.001
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ... 39 0.001
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 33 0.060
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 32 0.079
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 32 0.079
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch... 31 0.24
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 30 0.42
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 29 0.98
SPAC227.05 |||prefoldin subunit 4|Schizosaccharomyces pombe|chr ... 29 0.98
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac... 28 1.3
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb... 28 1.7
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 28 1.7
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce... 27 2.3
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 27 2.3
SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 27 2.3
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 3.0
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy... 27 3.0
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom... 27 3.9
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 27 3.9
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 26 5.2
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 26 5.2
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce... 26 5.2
SPBP8B7.24c |atg8||autophagy associated protein Atg8 |Schizosacc... 25 9.1
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 25 9.1
SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyc... 25 9.1
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa... 25 9.1
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 38.7 bits (86), Expect = 0.001
Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Frame = +1
Query: 103 KEFEEKRGDREVENLFKILEKIT-EIKDNESERIRKSGHNALPVLSEKLEQALNLCEELE 279
K+ EE+R RE E + LE+ E K + ER +K EK+ + L EE E
Sbjct: 639 KKREEQRLKREQEKKQQELERQKREEKQKQKEREKKLKKQQQEADREKMAREQRLREEEE 698
Query: 280 KDYLETQKVCQKQIKSNQELRKRE 351
K LE +K +K K +E R+RE
Sbjct: 699 KRILEERKRREKLDKEEEERRRRE 722
Score = 32.3 bits (70), Expect = 0.079
Identities = 29/139 (20%), Positives = 64/139 (46%), Gaps = 1/139 (0%)
Frame = +1
Query: 19 ELSREIGEIWS-RLFDHRPFLNGEIKYMLKEFEEKRGDREVENLFKILEKITEIKDNESE 195
E R + +I++ RLF+ R K + + + E EN K ++ +I++ E +
Sbjct: 538 EEGRRMFQIFAARLFEQRVLQAYREKVAQQRQAKLLEEIEEENKRKQERELKKIREKEKK 597
Query: 196 RIRKSGHNALPVLSEKLEQALNLCEELEKDYLETQKVCQKQIKSNQELRKREWDKFIDDM 375
R +K + +A L E+ + LE ++ + + K ++ KRE +K ++
Sbjct: 598 RDKKKQLKLAKEEERQRREAERLAEQAAQKALEAKRQEEARKKREEQRLKREQEKKQQEL 657
Query: 376 NFKCQRIDNAFEEKEEELR 432
+ + +E+E++L+
Sbjct: 658 ERQKREEKQKQKEREKKLK 676
>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 797
Score = 38.7 bits (86), Expect = 0.001
Identities = 24/83 (28%), Positives = 41/83 (49%)
Frame = +1
Query: 46 WSRLFDHRPFLNGEIKYMLKEFEEKRGDREVENLFKILEKITEIKDNESERIRKSGHNAL 225
W +L R ++ E+K + EF+EK E+ L K+L K+ E+K E +
Sbjct: 272 WQQLQARRAYVKMELKRVTTEFDEK--SVEISRLEKLLGKVMEVKSRSMEFTVPEAE--I 327
Query: 226 PVLSEKLEQALNLCEELEKDYLE 294
V+ ++L+ NL E L ++ E
Sbjct: 328 DVIEKRLQPLNNLIETLPVEFSE 350
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 32.7 bits (71), Expect = 0.060
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 5/99 (5%)
Frame = +1
Query: 181 DNESERIRKSGHNALPVLSEKLEQALNLCEELEKDYLETQKVCQKQIKSNQELRKREW-- 354
+NE + S EKL +++ +E E+++ +K +S+QEL
Sbjct: 569 NNELSESKNSLQTLCNAFQEKLAKSVMQLKENEQNFSSLDTSFKKLNESHQELENNHQTI 628
Query: 355 DKFIDDMNFKCQ--RIDNA-FEEKEEELRDLYADLKHKL 462
K + D + K Q +++ A FE+KE L D DL+ KL
Sbjct: 629 TKQLKDTSSKLQQLQLERANFEQKESTLSDENNDLRTKL 667
Score = 28.3 bits (60), Expect = 1.3
Identities = 20/103 (19%), Positives = 47/103 (45%)
Frame = +1
Query: 112 EEKRGDREVENLFKILEKITEIKDNESERIRKSGHNALPVLSEKLEQALNLCEELEKDYL 291
EE+ ++ + + LEK+ + N++ + N+L + L++ L C E+D
Sbjct: 240 EEQASNKSLRGEQERLEKLL-VSSNKTVSTLRQTENSLRAECKTLQEKLEKCAINEEDSK 298
Query: 292 ETQKVCQKQIKSNQELRKREWDKFIDDMNFKCQRIDNAFEEKE 420
+++ + + + DK I+D++ + DN E++
Sbjct: 299 LLEELKHNVANYSDAIVHK--DKLIEDLSTRISEFDNLKSERD 339
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 32.3 bits (70), Expect = 0.079
Identities = 40/160 (25%), Positives = 74/160 (46%), Gaps = 5/160 (3%)
Frame = +1
Query: 4 SMTMTELSREIGEIWSRLFDHRPFLNGEIKYMLKEFEEKRGDREVENLFKILEKITE-IK 180
S ++ + +EIG S + + +P L+ E++ L+ F + R + +++ +EK+ E I
Sbjct: 729 SRSVEDKKKEIGHYESLIKEKQPHLS-ELEMELRNFVKSRDELQIQ-----VEKVEEKIF 782
Query: 181 DNESERIRKSGHNALPVLSEKLEQALNLCEELE----KDYLETQKVCQKQIKSNQELRKR 348
+RI S + + Q+ ++LE K LE + +KQ S+ LR
Sbjct: 783 SGFCKRIGISDIHTYDEIHRTFTQSFTQ-KQLEFTKQKSLLENRISFEKQRVSDTRLRLE 841
Query: 349 EWDKFIDDMNFKCQRIDNAFEEKEEELRDLYADLKHKLNI 468
KFI+ + IDN +E+ E L A + +L +
Sbjct: 842 RMHKFIEKDQ---ESIDN-YEQNREALESEVATAEAELEL 877
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 32.3 bits (70), Expect = 0.079
Identities = 36/148 (24%), Positives = 65/148 (43%), Gaps = 4/148 (2%)
Frame = +1
Query: 127 DREVENLFKILEKITEIKDNESERIRKSGHNALPVLSEKLEQALNLCEELEKDYLETQKV 306
+ E + K E+ + K+ E +RK S+KL + E +D + +
Sbjct: 497 NNEFDRQLKEQEEDLQNKEEELTELRKLLREQTQD-SQKLRLLVEQLELERQDLKQAGEN 555
Query: 307 CQKQIKSNQELRKREWDKFIDDMNFKCQRIDNAFEEKEEELRDLYADLKHKLNIADI*IM 486
+ S+ E + + + + + +C +F+EK EL +LK KLN A+
Sbjct: 556 HYSNLSSDYETQIKSLESSLTNSQAECV----SFQEKINELNSQIDELKLKLNEANKKYQ 611
Query: 487 DLKGSLVDTNVR---IYPTNGF-LEYIK 558
+L S ++NV+ + P NG LE +K
Sbjct: 612 ELAISFENSNVKTQSVEPDNGLSLEALK 639
>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 161
Score = 30.7 bits (66), Expect = 0.24
Identities = 37/133 (27%), Positives = 64/133 (48%), Gaps = 6/133 (4%)
Frame = +1
Query: 85 EIKYMLKEFEEKRGDREVENLFKILEKITEIKDNESERIRKSGHNALPVLSEKLEQALNL 264
E++ LKE E + R+ E LE++ E + + R++ + +E+L + + L
Sbjct: 33 ELQLSLKEQEYESLSRKSEAAESQLEELEE--ETKQLRLKADNEDIQKTEAEQLSRKVEL 90
Query: 265 CEE-LE-KDYL---ETQKVCQKQIKSNQ-ELRKREWDKFIDDMNFKCQRIDNAFEEKEEE 426
EE LE D L T+K+ Q +K+ E R + ++ DDM E+K EE
Sbjct: 91 LEEELETNDKLLRETTEKMRQTDVKAEHFERRVQSLERERDDM-----------EQKLEE 139
Query: 427 LRDLYADLKHKLN 465
+ D Y +K +L+
Sbjct: 140 MTDKYTKVKAELD 152
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 29.9 bits (64), Expect = 0.42
Identities = 24/120 (20%), Positives = 53/120 (44%), Gaps = 3/120 (2%)
Frame = +1
Query: 112 EEKRGDREVENLFKILEKITEIKDNESERIRKSGHNALPVLSEKLEQALNLCEELEKDYL 291
E + ++ V++ ++ K E+ ++ S + N+ +K + + D
Sbjct: 89 ESEAIEKPVQSTTEVELKTNELAESNSSVAVEGDENSYAETPKKKHSLIRKRRKSPLDSS 148
Query: 292 ETQKVCQKQIKSNQELRKREWDKFIDDMNFKCQ-RIDN--AFEEKEEELRDLYADLKHKL 462
QKV +K + E ++ W K+I + + + + RI N + E++E L A + K+
Sbjct: 149 SAQKVLKKNKLNTLEQAQQNWSKYIKEQDIQDELRIANKDGYVERQEFLAKTRAAHEEKI 208
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 28.7 bits (61), Expect = 0.98
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +1
Query: 106 EFEEKRGDREVENLFKILEKITEI 177
+ +EK + E+EN+ KI EK+TE+
Sbjct: 776 KLQEKEANHELENIEKIEEKLTEV 799
>SPAC227.05 |||prefoldin subunit 4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 123
Score = 28.7 bits (61), Expect = 0.98
Identities = 19/53 (35%), Positives = 28/53 (52%)
Frame = +1
Query: 220 ALPVLSEKLEQALNLCEELEKDYLETQKVCQKQIKSNQELRKREWDKFIDDMN 378
+LPVL ++LEQ+ E LEK + +K QEL+ + KF D +N
Sbjct: 72 SLPVLLDQLEQSE---ESLEKQVDVLRSSMEKDETRIQELKSMLYSKFHDQIN 121
>SPBC365.07c |||TATA element modulatory factor homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 28.3 bits (60), Expect = 1.3
Identities = 23/124 (18%), Positives = 59/124 (47%), Gaps = 4/124 (3%)
Frame = +1
Query: 85 EIKYMLKEFEEKRG--DREVENLFKILEKITEIKDNESERIRKSGHNALPVLSEKLEQAL 258
+++ +FE++ ++E E+L + +E++T ++ E R+ + S + Q +
Sbjct: 103 QLELQKSQFEKRISILEKEKEDLQRKMEELT-VESMEVVRLTRQVETLSTQYSIQRSQWV 161
Query: 259 NLCEELEKDYLETQKVCQKQIKS--NQELRKREWDKFIDDMNFKCQRIDNAFEEKEEELR 432
E+ +K+ + +++ +K N E + + + M+ + ++ E K+EE+R
Sbjct: 162 REDEKKKKEIQDLKELYEKSEHGAKNWERERETFQNQVSQMSKQLDSLEKLCERKDEEIR 221
Query: 433 DLYA 444
A
Sbjct: 222 SSQA 225
>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 440
Score = 27.9 bits (59), Expect = 1.7
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 610 SDYETKCDVKDFDYFAKTVNLTNEDIELLR 699
SDYE +C V+D + T+ +T D +L+
Sbjct: 406 SDYEKECKVQDIGLYEDTILITLSDGRILK 435
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/42 (28%), Positives = 27/42 (64%)
Frame = +1
Query: 226 PVLSEKLEQALNLCEELEKDYLETQKVCQKQIKSNQELRKRE 351
P L + +++ L L ++ + YLE KV ++ ++SN++ K++
Sbjct: 569 PNLFQHVDEKLRLEKKEQLSYLEILKVIEQMLESNEQKFKKQ 610
>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 747
Score = 27.5 bits (58), Expect = 2.3
Identities = 20/76 (26%), Positives = 39/76 (51%)
Frame = +1
Query: 76 LNGEIKYMLKEFEEKRGDREVENLFKILEKITEIKDNESERIRKSGHNALPVLSEKLEQA 255
+ G+ YML++ EK+ DR N ++L + + +E+ + + +A+ L +K + +
Sbjct: 538 VRGQGVYMLRKLIEKKDDR--INPVRVLHVLINLLRDENSYVHLNVISAVVSLCDKYDDS 595
Query: 256 LNLCEELEKDYLETQK 303
L L K+Y T K
Sbjct: 596 L---IRLLKEYTNTNK 608
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 27.5 bits (58), Expect = 2.3
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 9/100 (9%)
Frame = +1
Query: 85 EIKYMLKEFEEKRG--------DREVENLFKILEKITEIKDNESERIRKSGHNALPVLSE 240
+I+ + KE EE G +REVENL K L+K ++ + E+E+ + E
Sbjct: 122 QIEDLKKEKEEMEGSLQGKEKLEREVENLRKELDKYKDLVETEAEK-------RAAITKE 174
Query: 241 KLEQALNLCEELEKDY-LETQKVCQKQIKSNQELRKREWD 357
+ E++ ++L KD E QK +EL+ + D
Sbjct: 175 ECEKSWLEQQKLYKDMEQENASTIQKLTSKIRELQASQLD 214
>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
Srp101|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 27.5 bits (58), Expect = 2.3
Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Frame = +1
Query: 76 LNGEIKYMLKEFEEKRGDREVENLFKILEKITEIKDNESERI-RKSGHNALPVLSEKLEQ 252
LN L F+EK DR+V N ++ + I + +S ++ ++ +LPV +
Sbjct: 83 LNSAHNIFLNLFKEKLEDRQVPNEAEVEKLFAPIFNRKSAQLENETDTKSLPVEANNDNS 142
Query: 253 ALNLCE-ELEKDYLETQKVCQKQIKSNQELRKREWDKFIDD 372
A E E++K ++++ + K ++LRK WD I +
Sbjct: 143 ARKKNEYEMKKKGAQSKQTNAPK-KGKKQLRK--WDDQITE 180
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 27.1 bits (57), Expect = 3.0
Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Frame = +1
Query: 166 ITEIKDNESERIRKSGHNALPVLSEKLEQALN--LCEEL-EKDYLETQKVCQKQIKSNQE 336
++E ++++SE + + + E L +LN L +E E+D LET++ +Q +N E
Sbjct: 3969 VSENENSDSEEENQDLDEEVNDIPEDLSNSLNEKLWDEPNEEDLLETEQKSNEQSAANNE 4028
Query: 337 ---LRKREWDKFIDDMNFKCQRIDNAFEEKEEELRD 435
+ K + +K ++D D +E EEE+ D
Sbjct: 4029 SDLVSKEDDNKALEDK-------DRQEKEDEEEMSD 4057
>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 667
Score = 27.1 bits (57), Expect = 3.0
Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 2/125 (1%)
Frame = +1
Query: 106 EFEEKRGDREVENLFKILEKITEIKDNESERIRKSGHNALPVLSEKLEQALNLCEELEKD 285
EF G ++V N+F+ILEK ++E+E+ P++ E + + K+
Sbjct: 42 EFSSTSG-KKVVNVFEILEKENNAINSEAEKSVSEEEQDEPLVEG--ESPIVSTNKKAKN 98
Query: 286 YLETQKVCQKQIKSNQELRKREWDKFIDDMNFKCQRIDNA--FEEKEEELRDLYADLKHK 459
+K +KQ K + KR+ D D N K + ++++ ++ +E+ A+LK K
Sbjct: 99 ----KKKKKKQQKKKKVTGKRDLDNQSSD-NEKLEGLESSKNIDDDIDEIEKAAAELKLK 153
Query: 460 LNIAD 474
D
Sbjct: 154 YREQD 158
>SPCPJ732.01 |vps5||retromer complex subunit
Vps5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 26.6 bits (56), Expect = 3.9
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +1
Query: 205 KSGHNALPVLSEKLEQALNLCEELEKDYLETQKVCQKQIKS 327
KS +LP L E+ E+ +LEK++ E+ + ++ + S
Sbjct: 499 KSQQKSLPYLEEQYEKYRAKAADLEKEFSESTTLLKRDLSS 539
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 26.6 bits (56), Expect = 3.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 586 NILKLKNGSDYETKCDVKDFDYFAKTVNLTNEDIE 690
N +K N + T+C V+ DY TV L E I+
Sbjct: 1120 NAIKFTNVGEVFTRCSVEKIDYSTNTVVLKWECID 1154
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 26.2 bits (55), Expect = 5.2
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 10/103 (9%)
Frame = +1
Query: 19 ELSREIGEIWSRLFDHRPFLNGEIKYMLKEFEEKRG-----DRE--VENLFKILEK--IT 171
++++ +GEIW L L KY++++ E G DRE V L +L +T
Sbjct: 1042 DVAKTMGEIWDTLVPSDLNLASHRKYLVEDCLEFMGSRSWRDRESSVNTLVSLLSNVPVT 1101
Query: 172 EIKDNESERIRKSGHNALPVLSEKLEQA-LNLCEELEKDYLET 297
E N+ E I L + E + +A LC+ L + +++
Sbjct: 1102 EYL-NQLEDIWNMSFRTLDDIKESVREASFPLCKLLARSVIQS 1143
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 26.2 bits (55), Expect = 5.2
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -2
Query: 352 ILFFSILGYFLFASGKPFVFQDNLFPILHINSR 254
++F ++ Y L ASG+ ++F I H+N+R
Sbjct: 1258 LIFAGVIYYLLAASGQNYIFISMTNFISHLNNR 1290
>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 26.2 bits (55), Expect = 5.2
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Frame = +1
Query: 196 RIRKSGHNA-LPVLSEKLEQALNLCEELEKDYLETQKVCQKQIKSNQELRKREWDKFIDD 372
R+RKS EKL + + EEL + + ++ QK++ E+ R WDK I+
Sbjct: 45 RLRKSSDQTEKKCWKEKLMKIRSELEELWEQSMMYEE--QKELTQLGEMLDRLWDKHINS 102
Query: 373 MNFKCQRI-DNAFEEKEEEL 429
K + I D A ++ +
Sbjct: 103 EGSKSETISDTAISGNDDTM 122
>SPBP8B7.24c |atg8||autophagy associated protein Atg8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 25.4 bits (53), Expect = 9.1
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = +1
Query: 172 EIKDNESERIRKSGHNALPVLSEKLEQA 255
E + ES+RIR+ + +PV+ EK++++
Sbjct: 12 EKRKTESQRIREKYPDRIPVICEKVDKS 39
>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 988
Score = 25.4 bits (53), Expect = 9.1
Identities = 24/103 (23%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
Frame = +1
Query: 391 RIDNAFEEKEEEL-RDLYADLKHKLNIADI*IMDLKGSLVDTNVRIYPTNGFLEYIKEIK 567
++D+A ++ +++ R+ L K +A ++K L ++N+ + N ++Y++E
Sbjct: 3 QLDDALQDAYKKVEREESLILGAKAMVASTKNPEVKRRL-ESNIAVSENN--IKYLRERI 59
Query: 568 DDKVPENILKLKNGSDYETKCDVKDFDYFAKTVNLTNEDIELL 696
D LK+++GS+ E++ D ++ + TN D LL
Sbjct: 60 D------ALKVESGSERESQSDKDSSKKYSDSAKSTNSDDHLL 96
>SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 25.4 bits (53), Expect = 9.1
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +1
Query: 103 KEFEEKRGDREVENLFKILEKITEIKDNESERIRKSGHNALPVLSEKL 246
++FEE+ DRE ++LF + + N + K + ++SEKL
Sbjct: 198 RKFEEEEIDREAKSLFSSQDGEIIRRLNAETTVEKELPKPIDLVSEKL 245
>SPAC19E9.02 |fin1||serine/threonine protein kinase
Fin1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 25.4 bits (53), Expect = 9.1
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +1
Query: 241 KLEQALNLCEE-LEKDYLETQKVCQKQIKSNQELRKREWDKFIDDMNFKCQR 393
+LE L E+ L E + V ++ +E+ +RE +K + DM+ + QR
Sbjct: 310 QLENDLQFREQRLSARESELENVIASRLAQREEILRRELEKQLRDMDARYQR 361
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.137 0.383
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,716,019
Number of Sequences: 5004
Number of extensions: 52281
Number of successful extensions: 241
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
- SilkBase 1999-2023 -