Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt9k11
(266 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom... 27 0.44
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 24 4.1
SPBC2F12.10 |||mitochondrial ribosomal protein subunit L35|Schiz... 24 4.1
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar... 23 5.5
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo... 23 5.5
SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide 1,2-al... 23 7.2
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom... 23 7.2
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 23 7.2
SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomy... 23 7.2
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 23 7.2
SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 23 7.2
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 23 9.6
>SPCC1235.10c |sec6||exocyst complex subunit
Sec6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 730
Score = 27.1 bits (57), Expect = 0.44
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +2
Query: 2 SKTIKMFCDIFVTYPFDCIDHK-EKLTHYFEDSVINVIIYSWCRSINRILSGKLTYEGDD 178
S +K+ D F Y DCI+H L F N + S+ RS I + ++GD+
Sbjct: 556 SSNMKLIVDTFRDYIVDCIEHMVPGLFDVFLLEASNALTISYLRS---IFNKNACFDGDN 612
Query: 179 EMK 187
++
Sbjct: 613 AIQ 615
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 23.8 bits (49), Expect = 4.1
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = +2
Query: 107 VIIYSWCRSINRILSGKLTYEGDDE--MKVLAQKYFNK 214
+++Y WC+ IN + T G+ M+ K F K
Sbjct: 973 LLVYKWCQGINNLTDVWETSNGECNVLMETRLSKVFEK 1010
>SPBC2F12.10 |||mitochondrial ribosomal protein subunit
L35|Schizosaccharomyces pombe|chr 2|||Manual
Length = 370
Score = 23.8 bits (49), Expect = 4.1
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -1
Query: 101 LHCLQNSVSIFLYGLYNRK 45
L CL ++VSI + LYNRK
Sbjct: 7 LTCLTSTVSISNFILYNRK 25
>SPAC1B3.08 |||COP9 signalosome complex subunit 12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 423
Score = 23.4 bits (48), Expect = 5.5
Identities = 9/34 (26%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = +2
Query: 122 WCRSINRILSGKL--TYEGDDEMKVLAQKYFNKN 217
W +++ +L+ + TY DD +K+ ++ +KN
Sbjct: 35 WGKTLTSVLNFDIPGTYSSDDVLKLTVERSISKN 68
>SPCC553.12c ||SPCC794.13|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 521
Score = 23.4 bits (48), Expect = 5.5
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -1
Query: 74 IFLYGLYNRKGMLQI 30
IF YG+YN G+L I
Sbjct: 141 IFYYGIYNAVGLLWI 155
>SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide
1,2-alpha-mannosidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 521
Score = 23.0 bits (47), Expect = 7.2
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = -1
Query: 266 FFFSQTKQFIYLFFCVDF 213
F+F++T +++YL F DF
Sbjct: 475 FWFAETLKYLYLLFEDDF 492
>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 594
Score = 23.0 bits (47), Expect = 7.2
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -2
Query: 82 VCQFFFMVYTIERVCYKYITKHFYC 8
V +FFF++ + VCY ++ YC
Sbjct: 488 VLKFFFIIPIAKNVCYLWV--FLYC 510
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 23.0 bits (47), Expect = 7.2
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -3
Query: 54 QSKGYVTNISQNIFIVLL 1
Q K YVTNI NI LL
Sbjct: 1136 QMKNYVTNIENNIRAKLL 1153
>SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 607
Score = 23.0 bits (47), Expect = 7.2
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = -2
Query: 82 VCQFFFMVYTIERVCYKYITK 20
+CQ FF+ + E++ Y Y K
Sbjct: 143 ICQMFFLDHYFEQLHYLYTRK 163
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 23.0 bits (47), Expect = 7.2
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +2
Query: 173 DDEMKVLAQKYFNKNRHKKIN 235
DD+++ L + YFN+ H +N
Sbjct: 1796 DDQLRELLKNYFNRVGHILLN 1816
>SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 140
Score = 23.0 bits (47), Expect = 7.2
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = -2
Query: 241 LFIYFFVSIFIKILLS*DFHLI 176
LF+YFF+++ I ++ FH +
Sbjct: 61 LFVYFFLTLIILLVSFMGFHYL 82
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 22.6 bits (46), Expect = 9.6
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = +2
Query: 107 VIIYSWCRSINRILSGKLTYEGDDEMKVLAQKYFNKNRHKKINK 238
++ +S C S+ S LTY+ E+ L + NR + K
Sbjct: 260 IVFFSSCASVEYFNSLFLTYKLPFEIVALHGQQVQSNRSRNFEK 303
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 920,669
Number of Sequences: 5004
Number of extensions: 13990
Number of successful extensions: 41
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 55545318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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