Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9k11
         (266 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1015 + 33819203-33821827                                         27   2.1  
12_01_0910 + 8858443-8859414                                           26   3.6  
11_06_0164 + 20833525-20834685,20835053-20835124,20836302-208363...    25   8.3  
07_03_1609 + 28128275-28128380,28128941-28129128,28129238-281294...    25   8.3  

>01_06_1015 + 33819203-33821827
          Length = 874

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 59  DHKEKLTHYFEDSVINVIIYSWCRSINRILSGKLTYEG 172
           DH E++ H    + + V+  S CRS+  I SG   + G
Sbjct: 344 DHLEEIQHIASLAQLEVLDASSCRSLRSIESGSFGHMG 381



 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 59  DHKEKLTHYFEDSVINVIIYSWCRSINRILSGKLTY 166
           DH E++ H    + + V+  S CRS+  I SG   +
Sbjct: 415 DHLEEIQHIASLAQLEVLNASSCRSLRSIESGSFDH 450


>12_01_0910 + 8858443-8859414
          Length = 323

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +2

Query: 98  VINVIIYSWCRSINRILSGKLTYE 169
           VINV++Y  CR+++  L+G++  E
Sbjct: 274 VINVVLYMHCRALHGELTGEIYNE 297


>11_06_0164 +
           20833525-20834685,20835053-20835124,20836302-20836328,
           20836419-20836496,20837005-20837046
          Length = 459

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = -2

Query: 256 LKRNSLFIYFFVSIFIKILLS*DFHLIITFI 164
           +KR S F  FFV   IKI+    F LII  I
Sbjct: 371 VKRQSFFAKFFVVAVIKIIAYFIFILIIIVI 401


>07_03_1609 +
           28128275-28128380,28128941-28129128,28129238-28129415,
           28130753-28130973
          Length = 230

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 97  TVFKIVCQFFFMVYTIERVCYKYI 26
           TVF  +C+  F  YT ++  +KY+
Sbjct: 203 TVFSSMCELRFCKYTSQQDAFKYL 226


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,946,370
Number of Sequences: 37544
Number of extensions: 63812
Number of successful extensions: 127
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 14,793,348
effective HSP length: 67
effective length of database: 12,277,900
effective search space used: 257835900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)