Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt9k09
(651 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 61 1e-10
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 52 5e-08
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 51 2e-07
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch... 49 5e-07
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 45 1e-05
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 42 6e-05
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 41 2e-04
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 40 3e-04
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 38 0.001
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 38 0.002
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 38 0.002
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 37 0.002
SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces... 36 0.004
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 36 0.007
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 35 0.012
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 34 0.015
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 34 0.015
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 31 0.11
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 31 0.11
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 31 0.19
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 30 0.33
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 29 0.44
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 29 0.58
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 29 0.58
SPBC8D2.09c |||U2 snRNP-associated protein Msl1 |Schizosaccharom... 29 0.77
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 28 1.0
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar... 28 1.3
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 27 1.8
SPBC19F8.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 2.3
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 27 3.1
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb... 26 4.1
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 26 5.4
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo... 26 5.4
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 7.2
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom... 25 9.5
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 61.3 bits (142), Expect = 1e-10
Identities = 31/83 (37%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
Frame = +3
Query: 384 TITTGPTKLLVSNLDFGVSDSDIKELF-SEFGILKSASVHYDRSGRSLGTADVVFERKAD 560
++ + +K++VSNL V+++ +KELF G K S+ Y +GRS G A ++F R D
Sbjct: 49 SVISEESKIIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAYGPNGRSKGIATIIFSRPGD 108
Query: 561 AVKAMKQYNGVPLDG-RAMNIQL 626
A +A +QY G +DG R M +++
Sbjct: 109 ATRAYEQYEGRLVDGTRKMKVEI 131
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 52.4 bits (120), Expect = 5e-08
Identities = 25/81 (30%), Positives = 41/81 (50%)
Frame = +3
Query: 405 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQY 584
+L VSN+ F ++D D+K +F FG ++ + D RS G + + A A+++
Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKM 400
Query: 585 NGVPLDGRAMNIQLATSEINT 647
NG L GR M + L + T
Sbjct: 401 NGFDLAGRNMRVCLGNDKFTT 421
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 50.8 bits (116), Expect = 2e-07
Identities = 24/74 (32%), Positives = 42/74 (56%)
Frame = +3
Query: 408 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYN 587
+ V NL + SD ++ +LF++ G + A + Y+ +GRS G V FE + DA ++++ N
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 341
Query: 588 GVPLDGRAMNIQLA 629
G GR + + A
Sbjct: 342 GYRYGGRPLQLSYA 355
Score = 39.1 bits (87), Expect = 5e-04
Identities = 19/68 (27%), Positives = 35/68 (51%)
Frame = +3
Query: 423 LDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYNGVPLD 602
L + V D+K+LF + G + A + ++ GRS G VV +A+ A++ +
Sbjct: 190 LPYNVRWQDLKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQMLHNTDFM 249
Query: 603 GRAMNIQL 626
GR + ++L
Sbjct: 250 GRTLEVRL 257
>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 274
Score = 49.2 bits (112), Expect = 5e-07
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 7/135 (5%)
Frame = +3
Query: 237 SNRSGGVQRGRNRGGITKSTNYSRGDVNST-----WKHDMFN--DFGERKLQRNSGTITT 395
S R G R + +T + + NS+ W+HD+ D R +
Sbjct: 23 SRRRGSQNRISKKSRLTYKFKRASKEHNSSPDDGPWQHDLDQEQDAHPRTTHLQKRQHSE 82
Query: 396 GPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAM 575
+ V NL + V + D+ LF F ++ ++YDR+GRS G+ DV FE DA A
Sbjct: 83 NRFGVRVENLHYQVLEKDVLSLFENFHPIR-VIMNYDRAGRSEGSCDVYFETSQDAEDAQ 141
Query: 576 KQYNGVPLDGRAMNI 620
K L G + I
Sbjct: 142 KTLQSTNLKGSEIQI 156
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 44.8 bits (101), Expect = 1e-05
Identities = 24/74 (32%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Frame = +3
Query: 408 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMKQY 584
+ +S L + +SDI+ F+ +G ++ V ++ +G+S+G A VVFER+ D A K
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKAS 161
Query: 585 NGVPLDGRAMNIQL 626
G+ L+GR + + +
Sbjct: 162 AGLMLNGRRIVVDV 175
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 42.3 bits (95), Expect = 6e-05
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Frame = +3
Query: 378 SGTITTGPTKLLVSNLDFGV--SDSDIKELFSEFGILKSASV-HYDRSGRSLGTADVVFE 548
+ T T P L V NLD + + ++ELFS+FG +KS ++ Y + S G V F
Sbjct: 411 TSTPTIDPCNLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFS 470
Query: 549 RKADAVKAMKQYNGV 593
+AV+A+ NGV
Sbjct: 471 HPFEAVQAINTLNGV 485
Score = 32.3 bits (70), Expect = 0.062
Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 6/95 (6%)
Frame = +3
Query: 357 ERKLQRNSGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGT-- 530
E+ ++N + + V NL SD+ ELF FG + + +S +
Sbjct: 5 EKLSEKNKRSTKKCEISIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKS 64
Query: 531 ----ADVVFERKADAVKAMKQYNGVPLDGRAMNIQ 623
A + FE K A A+ NG G + ++
Sbjct: 65 PTLFAFITFENKCSADNAIASLNGSSFQGNTLKVE 99
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 40.7 bits (91), Expect = 2e-04
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Frame = +3
Query: 408 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYD-RSGRSLGTADVVFERKADAVKAMKQY 584
+ V L + V D + + F E+G + A V D +SGRS G V FE +A KA
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETP-EAAKAAVAA 323
Query: 585 NGVP-LDGRAMNIQLA 629
NG +DGR +N+ L+
Sbjct: 324 NGTKEIDGRMVNLDLS 339
Score = 31.5 bits (68), Expect = 0.11
Identities = 22/52 (42%), Positives = 25/52 (48%)
Frame = +3
Query: 162 RIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRGDV 317
R GGG+ R G GG GF G RGR RGG +S N +RG V
Sbjct: 444 RTGGGS-----RGGRGGFGGRGGFGGRGGFGGGRGRGRGG-ARSGNPNRGSV 489
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 39.9 bits (89), Expect = 3e-04
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +3
Query: 405 KLLVSNLDFGVSDSD-IKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQ 581
+L++ NL + + ++ FS+FG ++ + GR G A V + + A +AM
Sbjct: 108 RLIIRNLPWSIKKPQHLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNS 167
Query: 582 YNGVPLDGRAMNIQLATSE 638
NG +DGR + + A S+
Sbjct: 168 LNGTEIDGRPIAVDWAVSK 186
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 37.9 bits (84), Expect = 0.001
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Frame = +3
Query: 408 LLVSNLDFGVSDSDIKELFSEF-GILKS---ASVHYDRSGR--SLGTADVVFERKADAVK 569
+ V NL+F + +++F G L + A R G+ S+G V F+ KA AV
Sbjct: 621 IYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKASAVA 680
Query: 570 AMKQYNGVPLDGRAMNIQLA 629
AM NG LDG + I+L+
Sbjct: 681 AMHAMNGFVLDGHKLEIKLS 700
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 408 LLVSNLDFGVSDSDIKELFSEFGIL 482
LLV N +G S ++ LFS FG L
Sbjct: 508 LLVKNFPYGTSAEELTSLFSPFGEL 532
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 37.5 bits (83), Expect = 0.002
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Frame = +3
Query: 408 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMKQY 584
+ + NLDF +++ DI +FSEFG ++ D+ +G+S G A + +E + V A+
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNM 92
Query: 585 NGVPLDGRAMNIQLATS 635
V L R + + S
Sbjct: 93 TNVKLLDRLVRVDHVAS 109
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 37.5 bits (83), Expect = 0.002
Identities = 20/87 (22%), Positives = 41/87 (47%)
Frame = +3
Query: 360 RKLQRNSGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADV 539
R+ Q + T + + NLD +++ + +LF +FG + S S+ D++ + G V
Sbjct: 247 RERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFV 306
Query: 540 VFERKADAVKAMKQYNGVPLDGRAMNI 620
+ A KA+ + N G+ + +
Sbjct: 307 NYANHECAQKAVDELNDKEYKGKKLYV 333
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 37.1 bits (82), Expect = 0.002
Identities = 22/63 (34%), Positives = 34/63 (53%)
Frame = +3
Query: 450 IKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYNGVPLDGRAMNIQLA 629
++ LF +G K V ++ R G A VVF+ +A +A+K G PL G+ M IQ +
Sbjct: 46 LEHLFGSYG--KVIDVQARKTLRMRGQAFVVFDNLENASRALKDLQGYPLYGKPMMIQYS 103
Query: 630 TSE 638
S+
Sbjct: 104 KSK 106
>SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 183
Score = 36.3 bits (80), Expect = 0.004
Identities = 22/70 (31%), Positives = 35/70 (50%)
Frame = +3
Query: 396 GPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAM 575
GPT +++ NL G S D+ FG + + V+ D G+ A V F A A + +
Sbjct: 98 GPTNVVIENLAPGTSSDDVAATLLNFGEILNCQVN-DSQGKV--RASVRFSTLASAQQVV 154
Query: 576 KQYNGVPLDG 605
++ +GV DG
Sbjct: 155 QKLDGVTADG 164
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 35.5 bits (78), Expect = 0.007
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = +3
Query: 408 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMKQY 584
L V L+ D D++ +FS FG + S V D+ +G SL A + F+ K KA +
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKM 305
Query: 585 NGVPLDGRAMNIQLATS 635
V +D +++ + S
Sbjct: 306 QNVLIDDSRIHVDFSQS 322
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 34.7 bits (76), Expect = 0.012
Identities = 17/61 (27%), Positives = 35/61 (57%)
Frame = +3
Query: 408 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYN 587
L + NL F ++ ++ +LF +G ++ + + ++ GTA VV+E DA +A ++ +
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQ--IRLGNTVQTRGTAFVVYENVQDARRACEKLS 71
Query: 588 G 590
G
Sbjct: 72 G 72
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 34.3 bits (75), Expect = 0.015
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +3
Query: 408 LLVSNLDFGVSDSDIKELFSEFG-ILKSASVHYDRSGRSLGTADVVFERKADAVKAMK 578
L V NLDF +D+D+KE F + G I + + ++ +G+ G V F +KAM+
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAME 287
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 34.3 bits (75), Expect = 0.015
Identities = 24/80 (30%), Positives = 38/80 (47%)
Frame = +3
Query: 408 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYN 587
L +SN+D VS++DIK LF + + SA V G S A + ++D A +
Sbjct: 75 LFISNIDPEVSENDIKYLFQRYNFI-SARVLRCVDGTSTSIAFIWLANESDIQNAQVEMQ 133
Query: 588 GVPLDGRAMNIQLATSEINT 647
G R++ + S+ NT
Sbjct: 134 GAFCLKRSILVHSVKSDKNT 153
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 31.5 bits (68), Expect = 0.11
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = +3
Query: 408 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMKQY 584
L VS + + + +++++FS+FG + + + + S G + F +A A+
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNL 162
Query: 585 NGVPLDGRAMNIQLA 629
N GR +N+Q A
Sbjct: 163 NSQEFYGRVLNVQKA 177
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 31.5 bits (68), Expect = 0.11
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = +3
Query: 408 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMKQY 584
L V+NL + ++++LF FG ++ + D+ +GR+ G A V + + A+KA +
Sbjct: 204 LRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARDRL 263
Query: 585 NG 590
+G
Sbjct: 264 DG 265
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 30.7 bits (66), Expect = 0.19
Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Frame = +3
Query: 399 PTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYD-RSGRSLGTADVVFERKA------ 557
PT++ VSN+ V+ ++ F FG + + + +G SLG + F++++
Sbjct: 93 PTQVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKRSSISVAA 152
Query: 558 -DAVKAMKQYNGVPLDGRAMNIQL 626
A A++Q NG+ G+ +++ L
Sbjct: 153 HSAKIAVQQANGLRFSGKPLSVVL 176
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 29.9 bits (64), Expect = 0.33
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = +3
Query: 111 DQIEMALDDIIKANK---KTRIGGGAGRKFDANKRTGRGGGAGFRSNRSG--GVQRGRNR 275
D++ ++ D +I ++ K + G K N GRGG GFR R G G G +R
Sbjct: 100 DKVYLSGDKLIPLDRFLPKPKTVGPKKPKGARNGPAGRGGRGGFRGGRGGSRGGFGGNSR 159
Query: 276 GG 281
GG
Sbjct: 160 GG 161
Score = 28.7 bits (61), Expect = 0.77
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Frame = +3
Query: 171 GGAGRKFDANKRTGRGGGA--GFRSNRSGGVQ---RGRNRGG 281
GG+ F N R G GGG+ GF GG + RG +RGG
Sbjct: 148 GGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRGG 189
Score = 27.5 bits (58), Expect = 1.8
Identities = 18/38 (47%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +3
Query: 171 GGAGRKFDANKRTGRGGG-AGFRSNRSGGVQRGRNRGG 281
G AGR R GRGG GF N GG G +RGG
Sbjct: 133 GPAGRGGRGGFRGGRGGSRGGFGGNSRGGF-GGGSRGG 169
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 29.5 bits (63), Expect = 0.44
Identities = 17/36 (47%), Positives = 18/36 (50%)
Frame = +3
Query: 174 GAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 281
G GR R GRGG G R SGG RG +GG
Sbjct: 37 GGGRGGARGGRGGRGGARGGRGGSSGG--RGGAKGG 70
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +3
Query: 162 RIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQ 260
R G GR R GRGG +G R GG +
Sbjct: 40 RGGARGGRGGRGGARGGRGGSSGGRGGAKGGAK 72
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 29.1 bits (62), Expect = 0.58
Identities = 17/66 (25%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = +3
Query: 408 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYD-RSGRSLGTADVVFERKADAVKAMKQY 584
++V+ + ++ +++LF++FG +K+ ++ D R+G G A + + A KA+ +
Sbjct: 12 IIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEK 71
Query: 585 NGVPLD 602
N LD
Sbjct: 72 NLSLLD 77
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 29.1 bits (62), Expect = 0.58
Identities = 22/78 (28%), Positives = 34/78 (43%)
Frame = +3
Query: 393 TGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKA 572
T T L +SNL ++SDI LF I+ S V D +S G + + A
Sbjct: 381 TESTNLYISNLPLHWNESDISTLFKPSKII-SNRVLRDSKEQSRGVGFARMQDRKTAEDI 439
Query: 573 MKQYNGVPLDGRAMNIQL 626
+ ++N LD +Q+
Sbjct: 440 INKFNNFVLDPALPPLQI 457
>SPBC8D2.09c |||U2 snRNP-associated protein Msl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 111
Score = 28.7 bits (61), Expect = 0.77
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Frame = +3
Query: 408 LLVSNLDFGVSDSDIKE----LFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAM 575
L V+NL+ ++ +D++ LFS +G + + ++ + G A VVF + A AM
Sbjct: 6 LYVNNLNDKINKNDLRTALYMLFSTYGTV--VDIVALKTPKMRGQAHVVFFDPSAAAIAM 63
Query: 576 KQYNGVPLDGRAMNIQLATSE 638
K G+ M IQ A S+
Sbjct: 64 KALKNFIFFGKEMKIQYAHSK 84
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 28.3 bits (60), Expect = 1.0
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +3
Query: 150 NKKTRIGGGAGRK--FDANKRTGRGGGAGFRSNRSGGVQR 263
N+ GGG GR+ + + G G G+R+NR G R
Sbjct: 78 NRGGHYGGGEGRQNNYRGGREGGYSNGGGYRNNRGFGQWR 117
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 180 GRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 281
G + + N+ GGG G ++N GG + G + GG
Sbjct: 72 GGRREYNRGGHYGGGEGRQNNYRGGREGGYSNGG 105
>SPAC13G6.06c |||glycine cleavage complex subunit
P|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1017
Score = 27.9 bits (59), Expect = 1.3
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +3
Query: 420 NLDFGVSDSDIKELFSEFGILKSASVHY 503
+LD V D DI+ LFS F I KS +Y
Sbjct: 473 SLDETVCDKDIQALFSIFNINKSVDQYY 500
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +3
Query: 408 LLVSNLDFGVSDSDIKELFSEFGILK 485
L VSNL G S S I LFS +G +K
Sbjct: 2 LYVSNLPVGTSSSAIHALFSAYGNVK 27
>SPBC19F8.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 218
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -3
Query: 58 KNKNNPFRTLPSQVDGDKM 2
KN N+ F+ LPS+ DGD M
Sbjct: 159 KNPNDVFQPLPSKRDGDNM 177
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Frame = +3
Query: 456 ELFSEFGILKSASVHYDRSGRSLGT---ADVVFERKADAVKAMKQYNGVPLDGRAMNIQL 626
E F ++G + +++ + S + ++RK DA +A+ +G DGR +
Sbjct: 140 EYFGQYGKIIKIAINKKAAANSANGHVGVYITYQRKEDAARAIAAIDGSVSDGRHLRASY 199
Query: 627 ATSEINT 647
T++ T
Sbjct: 200 GTTKYCT 206
>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 827
Score = 26.2 bits (55), Expect = 4.1
Identities = 21/89 (23%), Positives = 33/89 (37%)
Frame = +3
Query: 114 QIEMALDDIIKANKKTRIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKS 293
Q + L D +K +GG + + RG G R G + RNR G
Sbjct: 48 QSDFNLFDRQFTKRKFDVGGRRVKGTEGKPGVSRGVGEELRRRTIGAELKKRNRSGAIID 107
Query: 294 TNYSRGDVNSTWKHDMFNDFGERKLQRNS 380
+ + + + + M F R+ QR S
Sbjct: 108 RRFGENNPHLSVEEKMLERF-SREQQRRS 135
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 25.8 bits (54), Expect = 5.4
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +3
Query: 174 GAGRKFDANKRTGRGGGAGFRSNR-SGGVQRGRNRGGITKSTNYSRGDVNSTWKHDMFND 350
G G F +N T G G+G +N SGG+ N T ST G + K F+
Sbjct: 282 GGGSAFGSNT-TNTGFGSG--TNNASGGLFGQNNNTTSTPSTGLFGGSTFNQQK-PAFSG 337
Query: 351 FGERKLQRNSGTIT 392
FG N+GT T
Sbjct: 338 FGSTTNTTNTGTGT 351
>SPBC800.09 |sum2||G2/M transition checkpoint protein
Sum2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 25.8 bits (54), Expect = 5.4
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +3
Query: 183 RKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRGDVN 320
R+ N T G+G R R RGR RGG + Y+R N
Sbjct: 367 RERSLNMETFGVAGSGNRGRRG----RGRGRGGRGRGRGYARNQYN 408
>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 684
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +3
Query: 111 DQIEMALDDIIKANKKTRIGGGAGRKFDANKRTGRGGGAGFRSNRS 248
D+ + A DD+ K N+ G + A TG + R+N S
Sbjct: 603 DETDAAKDDLFKVNESIETNGHENFQKQALTSTGEQSSSNSRANPS 648
>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1325
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +3
Query: 234 RSNRSGGVQRGRNRGGITKSTNYSRGDVNSTWKHDMFN 347
+S++S G N + KSTN D + K +FN
Sbjct: 805 KSSKSEGKASVANMSALNKSTNNETSDSKPSLKSPLFN 842
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,731,360
Number of Sequences: 5004
Number of extensions: 57367
Number of successful extensions: 198
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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