Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9k08
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC569.06 |||S. pombe specific multicopy membrane protein famil...    28   1.2  
SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyc...    27   2.7  
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c...    26   4.7  
SPBC1703.03c |||armadillo repeat protein, unknown biological rol...    26   4.7  
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch...    26   6.3  
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom...    25   8.3  
SPCC663.12 |cid12||poly|Schizosaccharomyces pombe|chr 3|||Manual       25   8.3  
SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharom...    25   8.3  

>SPCC569.06 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -1

Query: 327 FSYLHQFVEPTYLLTCICS*RNVISV*ASVFLWF*YFLL 211
           FS ++  +   + + CICS   +  V   +F WF +F+L
Sbjct: 219 FSIVYGLISLWWAIRCICSRTKLHLVQVCLFCWFSFFIL 257


>SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -3

Query: 325 LIFTPICGADIPTDLYLFITKRNFSISVCISLVLIFSIGTGSE-TLRNVGS 176
           L+F       IP+ +   +   N +    +S++LI ++  GS+ T RN GS
Sbjct: 181 LLFVISAMTAIPSRVIAKVNIINITFQFLVSIILIIALAAGSDSTTRNSGS 231


>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 603

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -2

Query: 278 FVHNET*FQYKRLYFFGF 225
           FV+N+  ++++RLY FGF
Sbjct: 181 FVYNDFMYEFERLYAFGF 198


>SPBC1703.03c |||armadillo repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 664

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 582 WAARVAQHEIEHLDGKLYVDIM-DRKTMSCVCWEEVNLS 695
           W  ++ Q   E  +GK  ++   DR T SC+C    N+S
Sbjct: 128 WQTKIVQTLDEATEGKNVLETYEDRSTFSCLCAIAENIS 166


>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
           L27|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 136

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 369 PQAIVKSRGMEVIPFTVFVNPTLKVLNYNKVI 464
           P  + KS G + I     V P +KV+NYN ++
Sbjct: 50  PLKVTKSMGAKRIAKRSRVKPFIKVINYNHLM 81


>SPAC23C11.01 |||ER membrane protein, ICE2
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 2/85 (2%)
 Frame = -1

Query: 678 PSIHRTSSFGPLYPHRVCHL--SAQSHAELLSQPSLYKCWMWDFHLHCILKFVFLYI*VH 505
           PS+  T +F     + V  +  + Q++   L      K  MW     CIL  V+  + + 
Sbjct: 325 PSVFATFAFRISVMYAVTRILPAIQNNIIFLEYSRTSKQGMWSILSPCILIAVYTNLLLQ 384

Query: 504 QQYILVHFHSPPTISLCYSSKLSMW 430
             Y    F SP    LC S+++  W
Sbjct: 385 HLYPTPSFTSPVNQILC-SAEIWRW 408


>SPCC663.12 |cid12||poly|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 336

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 411 FTVFVNPTLKVLNYNKVILSEGCESVQGYTADVPRYKEIQISG 539
           F  FV+P ++ L Y K++L    E +Q +  +V    E+Q+ G
Sbjct: 27  FLEFVSPKIEELKYRKLLL----EKLQTHIREVVLDAELQVYG 65


>SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 107

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -3

Query: 388 DLTIAWGTLASCNGFSCITNILIFTPICGAD 296
           + T+AWGT      F CI+  L    +C  D
Sbjct: 66  ECTVAWGTCNHAFHFHCISRWLNTRNVCPLD 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,128,265
Number of Sequences: 5004
Number of extensions: 69765
Number of successful extensions: 181
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)