Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt9k08
(723 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0326 - 20950452-20950692,20950796-20950863,20950975-209510... 119 2e-27
01_06_0013 - 25579904-25580002,25580373-25580435,25580803-255809... 64 1e-10
01_06_0005 - 25514039-25514137,25514508-25514570,25514937-255150... 61 8e-10
02_05_0373 + 28374298-28374380,28375126-28375303,28375975-283760... 29 3.7
07_03_0636 + 20168180-20168462,20168961-20170303,20170401-201706... 29 4.9
10_05_0104 + 9190779-9191847,9192544-9193332,9193652-9194049 28 6.5
11_04_0236 + 15215386-15216197,15216854-15218888,15219131-152200... 28 8.6
>01_05_0326 -
20950452-20950692,20950796-20950863,20950975-20951064,
20951237-20951620
Length = 260
Score = 119 bits (287), Expect = 2e-27
Identities = 58/169 (34%), Positives = 97/169 (57%)
Frame = +3
Query: 165 VQVGDPTLRKVSEPVPIENIKTKEIQTLILKLRFVMNKYKSVGMSAPQIGVNMRIFVMQL 344
V+ GDP L + ++ V +I ++++Q +I ++ VM K VG++APQIGV ++I V++
Sbjct: 75 VKAGDPVLHEPAQDVAPGDIPSEKVQGVIDRMVAVMRKAPGVGLAAPQIGVPLKIIVLED 134
Query: 345 NPLQLANVPQAIVKSRGMEVIPFTVFVNPTLKVLNYNKVILSEGCESVQGYTADVPRYKE 524
++ P+ ++++ V +NP LK + + EGC SV GY A V R+ +
Sbjct: 135 TQEYISYAPKKDIEAQDRRPFDLLVIINPKLKTTSKRTALFFEGCLSVDGYRALVERHLD 194
Query: 525 IQISGYNEDGNPTSNTYRDWAARVAQHEIEHLDGKLYVDIMDRKTMSCV 671
+++SG + +G P W AR+ QHE +HL+G LYVD M +T V
Sbjct: 195 VEVSGLDRNGRPIKVEASGWQARILQHECDHLEGTLYVDTMVPRTFRIV 243
>01_06_0013 -
25579904-25580002,25580373-25580435,25580803-25580913,
25581708-25581968,25582156-25582201,25582365-25582503,
25582612-25582816
Length = 307
Score = 63.7 bits (148), Expect = 1e-10
Identities = 43/128 (33%), Positives = 63/128 (49%)
Frame = +3
Query: 288 VGMSAPQIGVNMRIFVMQLNPLQLANVPQAIVKSRGMEVIPFTVFVNPTLKVLNYNKVIL 467
+G+SAPQ+GVN+++ V NP A VK G E+ V VNP + ++ ++
Sbjct: 157 IGLSAPQVGVNVQLMVF--NP--------AGVKGEGEEI----VLVNPVVYKMSKRLLVY 202
Query: 468 SEGCESVQGYTADVPRYKEIQISGYNEDGNPTSNTYRDWAARVAQHEIEHLDGKLYVDIM 647
EGC S G A+V R ++I + G +ARV QHE +HL G L+ D M
Sbjct: 203 EEGCLSFPGIYANVVRPDNVKIDAQDVTGAKIKVKLSGLSARVFQHEFDHLQGILFFDRM 262
Query: 648 DRKTMSCV 671
+ V
Sbjct: 263 SLDVLESV 270
>01_06_0005 -
25514039-25514137,25514508-25514570,25514937-25515047,
25515843-25516103,25516293-25516338,25516504-25516904
Length = 326
Score = 61.3 bits (142), Expect = 8e-10
Identities = 42/128 (32%), Positives = 62/128 (48%)
Frame = +3
Query: 288 VGMSAPQIGVNMRIFVMQLNPLQLANVPQAIVKSRGMEVIPFTVFVNPTLKVLNYNKVIL 467
+G+SAPQ+GVN+++ V NP A VK G E+ V VNP + ++ ++
Sbjct: 176 IGLSAPQVGVNVQLMVF--NP--------AGVKGEGEEI----VLVNPVVYKMSKRLLVY 221
Query: 468 SEGCESVQGYTADVPRYKEIQISGYNEDGNPTSNTYRDWAARVAQHEIEHLDGKLYVDIM 647
E C S G A+V R ++I + G +ARV QHE +HL G L+ D M
Sbjct: 222 EESCLSFPGIYANVVRPDNVKIDAQDVTGAKIKVKLSGLSARVFQHEFDHLQGILFFDRM 281
Query: 648 DRKTMSCV 671
+ V
Sbjct: 282 SLDVLESV 289
>02_05_0373 +
28374298-28374380,28375126-28375303,28375975-28376065,
28376162-28376256,28376379-28376468,28376789-28376837,
28376941-28377079,28377224-28377340,28377437-28377527,
28377604-28377746,28378009-28378123,28378439-28378483,
28378565-28378645
Length = 438
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -3
Query: 571 VLDVGFPSSLYPEICISLYLGTSAVYPCTLSQPSD 467
++D G+P +L PEI + LY+ V S+PSD
Sbjct: 119 IMDFGYPQNLSPEI-LKLYITQEGVRSPFSSKPSD 152
>07_03_0636 +
20168180-20168462,20168961-20170303,20170401-20170678,
20170790-20170821,20170908-20171314,20171401-20171847
Length = 929
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 412 NGITSMPLDLTIAWGTLASCNGFSCITNILIF 317
N + S L L+ WG C GFSC+ +LIF
Sbjct: 824 NEVGSNRLSLSSFWGLYLIC-GFSCVLALLIF 854
>10_05_0104 + 9190779-9191847,9192544-9193332,9193652-9194049
Length = 751
Score = 28.3 bits (60), Expect = 6.5
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = -2
Query: 407 NHFHAP*FNNCLGYISKLQWIQLH-HKY-SHIYTNLWSRHT 291
N F P + L ISKL+++QLH +K+ I N+WS T
Sbjct: 231 NQFEGP-IPDSLSNISKLEYLQLHGNKFQGRIPPNIWSSGT 270
>11_04_0236 +
15215386-15216197,15216854-15218888,15219131-15220017,
15222420-15226194
Length = 2502
Score = 27.9 bits (59), Expect = 8.6
Identities = 21/70 (30%), Positives = 42/70 (60%)
Frame = +3
Query: 297 SAPQIGVNMRIFVMQLNPLQLANVPQAIVKSRGMEVIPFTVFVNPTLKVLNYNKVILSEG 476
+A ++ + R+ V + +P QLANV V+S + ++ V+P+ +VL +V+ E
Sbjct: 523 NANRLSLQSRV-VEKRHP-QLANVGMEQVRSF-VAILSDIHVVSPSFQVL---RVLALED 576
Query: 477 CESVQGYTAD 506
C+ ++GYT++
Sbjct: 577 CKFIEGYTSN 586
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,206,126
Number of Sequences: 37544
Number of extensions: 407722
Number of successful extensions: 930
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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