Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9k08
         (723 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82083-4|CAB04972.1|  371|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z48006-4|CAA88048.1|  429|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U80033-4|AAC48198.2|  467|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z81585-4|CAB04687.1|  345|Caenorhabditis elegans Hypothetical pr...    28   7.8  
AF022983-7|AAB69943.1|  306|Caenorhabditis elegans Hypothetical ...    28   7.8  

>Z82083-4|CAB04972.1|  371|Caenorhabditis elegans Hypothetical
           protein ZK1010.6 protein.
          Length = 371

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 272 EQIQVSRYVGSTNWCKYENICDATESIATC*CTP 373
           + I   RY GS   C   ++C  T S+ TC   P
Sbjct: 163 DNIDTERYCGSNRDCSSTSVCVFTNSVGTCFVDP 196


>Z48006-4|CAA88048.1|  429|Caenorhabditis elegans Hypothetical
           protein F19C6.3 protein.
          Length = 429

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -1

Query: 624 HLSAQSHAELLSQPSLYKCWMWDFHLHC 541
           H  A  H E+      Y+C  WD  +HC
Sbjct: 279 HKIANPHGEVFWPGDCYRCQCWDKKVHC 306


>U80033-4|AAC48198.2|  467|Caenorhabditis elegans Hypothetical
           protein T23H2.4 protein.
          Length = 467

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +3

Query: 345 NPLQLANVPQAIVKSRGMEVIPFTVFVNPTLKVLN 449
           +P+ +  +   +V +RG+ + P T F NP + + N
Sbjct: 426 SPVGILPISPTLVSARGIPIFPITSFSNPLIPLSN 460


>Z81585-4|CAB04687.1|  345|Caenorhabditis elegans Hypothetical
           protein T05E12.4 protein.
          Length = 345

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -3

Query: 373 WGTLASCNGFSCITNILIFTPICGADIPTDLYLFIT 266
           W      + FSC+T++ I   IC   +P+ +Y  +T
Sbjct: 185 WQHYVLVDCFSCVTSLQIHISICSRFVPSLIYPILT 220


>AF022983-7|AAB69943.1|  306|Caenorhabditis elegans Hypothetical
           protein R13D11.1 protein.
          Length = 306

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -3

Query: 328 ILIFTPICGADIPTDLYLFITKRNFSISVCISLVLIFSIG 209
           IL F  +C A     LYLFI +R+   +  + LV+  S+G
Sbjct: 21  ILTFQGLCSAINGYILYLFIMRRDLQKNKHMRLVIFLSLG 60


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,091,253
Number of Sequences: 27780
Number of extensions: 380500
Number of successful extensions: 996
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 996
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)