Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9k03
         (168 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.06c |gmh3||alpha-1,2-galactosyltransferase Gmh3|Schizo...    27   0.33 
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz...    23   5.4  
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa...    23   5.4  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    23   7.1  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    23   7.1  
SPAC343.20 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    22   9.4  

>SPAC22E12.06c |gmh3||alpha-1,2-galactosyltransferase
           Gmh3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 27.1 bits (57), Expect = 0.33
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 69  FNPCSHHQYGYTIHHRFSYSYVS 1
           FN C  ++  Y  HH + + YV+
Sbjct: 108 FNQCIENRINYAKHHNYGFEYVN 130


>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 65  ILVVITNTVIQFITGSLIH 9
           IL+V+ N+VI+F    L+H
Sbjct: 276 ILLVVFNSVIEFYKRCLVH 294


>SPBC31F10.04c |srb4|med17|mediator complex subunit
           Srb4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -3

Query: 136 STLQYVTIHLITKYINHHIN 77
           S+ Q+ ++  + +YI HHIN
Sbjct: 516 SSNQFSSLKNVCQYIEHHIN 535


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 24  GDELYNRIGDDYKD 65
           G  L++ IGD+YKD
Sbjct: 126 GHYLFDNIGDNYKD 139


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
          |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 66 NPCSHHQYGYTIHHRFSY 13
          N  SH + G T+HHR  +
Sbjct: 22 NAYSHRRAGDTLHHRHKH 39


>SPAC343.20 |||sequence orphan|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 113

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 57 SHHQYGYTIHHRFSYSYV 4
          SH    + +HHR  Y YV
Sbjct: 27 SHSSTIFCVHHRVRYIYV 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 598,636
Number of Sequences: 5004
Number of extensions: 7843
Number of successful extensions: 22
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 2,362,478
effective HSP length: 36
effective length of database: 2,182,334
effective search space used: 41464346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)