Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9k03
         (168 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1144 + 24670224-24670607,24670723-24670928,24671211-246713...    29   0.38 
05_01_0004 - 34967-35149,35340-35501,36078-36225,36309-36385,365...    27   2.7  
07_01_0055 + 424097-427129                                             25   8.2  

>08_02_1144 +
           24670224-24670607,24670723-24670928,24671211-24671310,
           24671539-24672864
          Length = 671

 Score = 29.5 bits (63), Expect = 0.38
 Identities = 12/22 (54%), Positives = 19/22 (86%)
 Frame = -2

Query: 80  KSISLILVVITNTVIQFITGSL 15
           +S+SL+L +IT+ ++ FITGSL
Sbjct: 289 ESLSLVLDIITDELVAFITGSL 310


>05_01_0004 -
           34967-35149,35340-35501,36078-36225,36309-36385,
           36507-36577,36850-37263,37518-38268
          Length = 601

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = -2

Query: 167 FFFTNNSTLFIYIAICNNSLDY*IH*SP---HKSISLILVVITN 45
           +  +NN  L +Y  + NN+L Y +H  P   H+ I    +++ N
Sbjct: 364 YCISNNQRLLVYDFVPNNTLHYHLHGHPRIIHRDIKSSNILLDN 407


>07_01_0055 + 424097-427129
          Length = 1010

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 152 NSTLFIYIAICNNSLDY*IH 93
           N  L IY  + NNSLDY +H
Sbjct: 803 NDRLLIYSYMENNSLDYWLH 822


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,320,888
Number of Sequences: 37544
Number of extensions: 38005
Number of successful extensions: 79
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 14,793,348
effective HSP length: 36
effective length of database: 13,441,764
effective search space used: 255393516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)