Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9k03
         (168 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   1.8  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    20   3.2  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    19   5.6  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       19   7.3  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    19   7.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              19   7.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    19   7.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    19   7.3  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    18   9.7  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    18   9.7  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    18   9.7  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -1

Query: 63  PCSHHQYGYTIHHRFS 16
           P  HH +  T HH+ S
Sbjct: 430 PHHHHSHAATPHHQHS 445


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = -2

Query: 149 STLFIYIAICNNSLD 105
           S+LF+++  CN+ L+
Sbjct: 409 SSLFLWLGYCNSLLN 423


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 59  QGLN**IYVVINVFSNQVNCYI 124
           +G+N   YVV +V  N VN ++
Sbjct: 52  KGINWRSYVVCDVAYNNVNNWL 73


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +3

Query: 18  RTGDELYNRIGDDYKD*TD 74
           RTG    N+ GDD  D  D
Sbjct: 100 RTGFNNKNKDGDDNNDYED 118


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 39  NRIGDDYKD*TDRF 80
           N+I D YKD   R+
Sbjct: 77  NKIHDAYKDLNQRY 90


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 5/8 (62%), Positives = 8/8 (100%)
 Frame = -1

Query: 45   YGYTIHHR 22
            +GYTIH++
Sbjct: 1397 HGYTIHYK 1404


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 5/10 (50%), Positives = 9/10 (90%)
 Frame = -1

Query: 42   GYTIHHRFSY 13
            GYT+H+R ++
Sbjct: 1436 GYTLHYRTAH 1445


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 5/10 (50%), Positives = 9/10 (90%)
 Frame = -1

Query: 42   GYTIHHRFSY 13
            GYT+H+R ++
Sbjct: 1432 GYTLHYRTAH 1441


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = -2

Query: 62  LVVITNTVIQFIT 24
           +V+ TNT++ F+T
Sbjct: 264 IVLGTNTILTFMT 276


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase
          domain protein protein.
          Length = 448

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 4  YV*IREPVMNCITVLVM 54
          Y  +R+   NCITV  M
Sbjct: 45 YEVVRDAYDNCITVCNM 61


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
          protein.
          Length = 693

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = +3

Query: 30 ELYNRIGDD 56
          +++NR GDD
Sbjct: 47 QVFNRFGDD 55


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,706
Number of Sequences: 438
Number of extensions: 555
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 35
effective length of database: 131,013
effective search space used:  2620260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)