Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9k02
         (578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    26   3.5  
SPAC1296.02 |cox4||cytochrome c oxidase subunit IV|Schizosacchar...    26   3.5  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    26   4.6  
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c...    25   6.1  

>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 293 FEIAPHRHSILEFLFSSKF*NKTITGYQ 210
           F + PH HS+  F   S F N++++  Q
Sbjct: 902 FRLGPHMHSVKSFETESSFGNRSLSPKQ 929


>SPAC1296.02 |cox4||cytochrome c oxidase subunit
           IV|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 164

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +1

Query: 406 LLWTTLFQIMLSVQAPGCAGMERLGAPGGPRLRHDH 513
           L+W T+++  L  + P C  + +L   G P   H H
Sbjct: 130 LIWMTVYKDKLR-RCPECGSVYKLKFMGDPNAEHSH 164


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 293 NVCQSYLICLLVTIYC 340
           N+C S+L+CL   +YC
Sbjct: 289 NLCPSFLVCLHSLLYC 304


>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 581

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -1

Query: 458 HPGACTESII*NSVVHNNSGRFFTYR*QAVLYSL 357
           +PG   E+++  SV++N  G  FT+  Q+ + SL
Sbjct: 482 YPGMVLEAMVGVSVINNTFGYVFTFACQSWIDSL 515


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,155,817
Number of Sequences: 5004
Number of extensions: 36897
Number of successful extensions: 71
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)