Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9k02
         (578 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    25   1.8  
AF119382-1|AAD27585.1|  394|Anopheles gambiae caudal protein hom...    25   2.3  
DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative methopren...    23   7.2  
AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger transc...    23   7.2  
AJ439353-1|CAD27923.1| 1127|Anopheles gambiae putative Na-K-Cl s...    23   9.5  
AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript...    23   9.5  

>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 25.0 bits (52), Expect = 1.8
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 502 RHDHRHHHSTL 534
           RH H HHHS L
Sbjct: 432 RHHHHHHHSAL 442


>AF119382-1|AAD27585.1|  394|Anopheles gambiae caudal protein
           homolog protein.
          Length = 394

 Score = 24.6 bits (51), Expect = 2.3
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = +1

Query: 454 GCAGMERLGAPGGPRLRHDHRHHH 525
           G  G   L     P L H H HHH
Sbjct: 106 GGIGSGALHLGQNPNLHHHHHHHH 129


>DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative
           methoprene-tolerant protein protein.
          Length = 1115

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +1

Query: 484 PGGPRLRHDHRHHH 525
           PG  +  H H HHH
Sbjct: 178 PGHSQHHHHHHHHH 191


>AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger
           transcription factor pannier protein.
          Length = 537

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +1

Query: 493 PRLRHDHRHHHST 531
           P   H H HHH T
Sbjct: 502 PHHHHHHHHHHPT 514


>AJ439353-1|CAD27923.1| 1127|Anopheles gambiae putative Na-K-Cl
           symporter protein.
          Length = 1127

 Score = 22.6 bits (46), Expect = 9.5
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 168 LLVNYSKLL*TRLSLVPCDCFILKFTAKKKF*N 266
           LLVN++ LL  +LSL+ C   + K    +K+ N
Sbjct: 701 LLVNFAYLLTKKLSLLVCG-HVTKTHVSQKYRN 732


>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1099

 Score = 22.6 bits (46), Expect = 9.5
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +1

Query: 484 PGGPRLRHDHRHHHSTLEWEKQQ 552
           P  PR+RH  R  H+   ++  Q
Sbjct: 218 PSSPRMRHQGRIRHADRRYKATQ 240


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 555,052
Number of Sequences: 2352
Number of extensions: 9378
Number of successful extensions: 20
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 55086417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)