Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9k02
         (578 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024763-7|AAF60517.1|  304|Caenorhabditis elegans Pdgf/vegf gro...    34   0.063
Z74042-17|CAA98537.1|  688|Caenorhabditis elegans Hypothetical p...    24   3.7  
AL031623-1|CAA20938.1|  688|Caenorhabditis elegans Hypothetical ...    24   3.7  
U80838-2|AAL02517.1|  297|Caenorhabditis elegans Abnormal cell l...    28   5.5  
U80838-1|AAU05570.1|  597|Caenorhabditis elegans Abnormal cell l...    27   7.3  

>AC024763-7|AAF60517.1|  304|Caenorhabditis elegans Pdgf/vegf growth
           factor relatedprotein 1 protein.
          Length = 304

 Score = 34.3 bits (75), Expect = 0.063
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +1

Query: 457 CAGMERLGAPGGPRLRHDHRHHHST--LEWEKQQKLXAM-VGR 576
           C  + R    GGPR  H HRHHH +  ++ E+ QK+  + VGR
Sbjct: 259 CDCVRRRQHHGGPRGHHGHRHHHRSRPIDTEEVQKIGQLKVGR 301


>Z74042-17|CAA98537.1|  688|Caenorhabditis elegans Hypothetical
           protein T11F9.12 protein.
          Length = 688

 Score = 24.2 bits (50), Expect(2) = 3.7
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +1

Query: 487 GGPRLRHDHRHHH 525
           G  R+ H H HHH
Sbjct: 184 GQDRIHHQHHHHH 196



 Score = 22.6 bits (46), Expect(2) = 3.7
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +1

Query: 502 RHDHRHHHST 531
           +H H HHH+T
Sbjct: 191 QHHHHHHHTT 200


>AL031623-1|CAA20938.1|  688|Caenorhabditis elegans Hypothetical
           protein T11F9.12 protein.
          Length = 688

 Score = 24.2 bits (50), Expect(2) = 3.7
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +1

Query: 487 GGPRLRHDHRHHH 525
           G  R+ H H HHH
Sbjct: 184 GQDRIHHQHHHHH 196



 Score = 22.6 bits (46), Expect(2) = 3.7
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +1

Query: 502 RHDHRHHHST 531
           +H H HHH+T
Sbjct: 191 QHHHHHHHTT 200


>U80838-2|AAL02517.1|  297|Caenorhabditis elegans Abnormal cell
           lineage protein 42,isoform a protein.
          Length = 297

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 475 LGAPGGPRLRHDHRHHHSTLEWEKQ 549
           L  P     RH H HHHS+L+ + Q
Sbjct: 10  LAEPVPSTSRHSHHHHHSSLKDQNQ 34


>U80838-1|AAU05570.1|  597|Caenorhabditis elegans Abnormal cell
           lineage protein 42,isoform b protein.
          Length = 597

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 502 RHDHRHHHSTLEWEKQ 549
           RH H HHHS+L+ + Q
Sbjct: 319 RHSHHHHHSSLKDQNQ 334


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,108,864
Number of Sequences: 27780
Number of extensions: 213335
Number of successful extensions: 510
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)