Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9k02
         (578 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    24   1.2  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    24   1.2  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   2.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   6.7  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -2

Query: 106 HL-NFTIAYFITEFCSSFFHIGRETSAIERVLLF 8
           HL  FT+  F T++C+S  + G E S ++  LLF
Sbjct: 205 HLPRFTLEKFFTDYCNSKTNTG-EYSCLKVDLLF 237


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -2

Query: 106 HL-NFTIAYFITEFCSSFFHIGRETSAIERVLLF 8
           HL  FT+  F T++C+S  + G E S ++  LLF
Sbjct: 205 HLPRFTLEKFFTDYCNSKTNTG-EYSCLKVDLLF 237


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -2

Query: 310 IRLTNISRLHRTVTQF*NFFLAVNFKIKQSQ 218
           +RL  +SRL R V+Q+   ++  N + K+++
Sbjct: 217 VRLLRLSRLVRYVSQWEEVYILQNLQKKRTR 247


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 503 GTITDTIIPHWNGKNSKNC 559
           G + D +IP  N  +SK C
Sbjct: 188 GGLKDNLIPDKNDPDSKEC 206


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,234
Number of Sequences: 438
Number of extensions: 2689
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)