Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt9j23
(551 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 29 0.34
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 28 0.80
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 28 1.1
SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase Pmp1|... 27 2.4
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 27 2.4
SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces... 27 2.4
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 26 3.2
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 26 4.2
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 25 7.4
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl... 25 7.4
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 29.5 bits (63), Expect = 0.34
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 452 NFLRYSLLPTASTRERGRLEVRSALGRVHVICTVVDRFV 336
NF ++P STR+R + +R G +H+IC D +
Sbjct: 756 NFRVLDIIPFTSTRKRMSVIIRDEDGIIHLICKGADTVI 794
>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 557
Score = 28.3 bits (60), Expect = 0.80
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Frame = +3
Query: 312 DYNPNG-NGYEPIDNGAYYVDPPQG---RPYFKPTPFPG 416
DYN N N Y PI N Y+++ G PYF PG
Sbjct: 119 DYNNNRKNFYPPIQNSTYFINATGGIDSMPYFGLNNAPG 157
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 27.9 bits (59), Expect = 1.1
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = +1
Query: 265 ATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTSSLPLSL 414
A+ L +++ T+ + P +T ET ++ S+ T T+ + TSS P+SL
Sbjct: 234 ASTLESSSLTNTVSPTESTFYETKSSTSSVP--TQTIDSSSFTSSTPVSL 281
>SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase
Pmp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 278
Score = 26.6 bits (56), Expect = 2.4
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +3
Query: 306 PKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPT 404
PK PN N +P NG + PP Y KPT
Sbjct: 46 PKASKPNSN--QPYPNGPVCIYPPNIYLYAKPT 76
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 26.6 bits (56), Expect = 2.4
Identities = 10/36 (27%), Positives = 17/36 (47%)
Frame = +2
Query: 338 RTYRQRCILRGPSPRPTLLQAYPFPWCSRWEVKNIL 445
R + ++C R P RP + PW + + K I+
Sbjct: 1280 RDFIEQCFERDPEQRPRAVDLLTHPWITDFRKKTII 1315
>SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 26.6 bits (56), Expect = 2.4
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 111 VKVVENADSVLISNPDPGFSRPVIGQPGYVPI 206
V++VE+ D I+ P GF P I P VP+
Sbjct: 133 VEIVEDDDDEEIAYPKEGFVTPRISPPPDVPL 164
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 26.2 bits (55), Expect = 3.2
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +1
Query: 235 PTTDPKGQETATNLLTTARTSLILPKITTLMETATNLSTTVHITWT 372
P+T T T+ T+ +P T+L T T T H+ T
Sbjct: 73 PSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAPPTTHVNST 118
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 25.8 bits (54), Expect = 4.2
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +1
Query: 238 TTDPKGQETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTSSLPLS 411
TT P + T T ++ T T + + TT+ + T + T T P + T+ LP++
Sbjct: 99 TTIPTVETTTTPMVETT-TITPMVETTTITPMVEAMITLMEETMTTPMEETTTILPMA 155
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Frame = -1
Query: 317 VIFG--RINDVRAVVNRFVAVSW 255
V+FG R+ DV +N+FV V W
Sbjct: 64 VLFGFLRVKDVNTGLNKFVLVCW 86
>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
Plh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 623
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 309 KDYNPNGNGYEPIDNGAYYVDPPQGRP 389
K Y +G G +P + G YY + P+G+P
Sbjct: 479 KIYCVHGVG-KPTERGYYYTNNPEGQP 504
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,273,099
Number of Sequences: 5004
Number of extensions: 48773
Number of successful extensions: 138
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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