Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt9j23
(551 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0471 + 34169562-34169892,34170121-34170347 37 0.009
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 34 0.066
02_04_0382 - 22501041-22501279,22501717-22501810 30 1.1
06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814... 30 1.4
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 29 1.9
06_03_0486 - 21344680-21344805,21344922-21345115,21350027-213501... 29 3.3
08_02_1289 - 25923916-25924586,25925148-25926630 27 7.5
04_03_0904 + 20717005-20718087 27 7.5
03_05_0937 - 28967038-28967245,28967348-28967556,28967584-289676... 27 7.5
09_02_0417 - 8915604-8916779,8916863-8917270 27 10.0
>03_06_0471 + 34169562-34169892,34170121-34170347
Length = 185
Score = 37.1 bits (82), Expect = 0.009
Identities = 34/106 (32%), Positives = 40/106 (37%), Gaps = 8/106 (7%)
Frame = +3
Query: 123 ENADSVLISNPDPGFSRPV-IGQPGYVPISTG----PAYVXXXXXXXXXXXXGYEPIDNR 287
+N DS SN D GF G PG P+ G P Y P
Sbjct: 6 DNHDS---SNADKGFHGAYPSGYPGAYPLMQGYPNSPGQYPTPGGYPSAPPGQYPPAGGY 62
Query: 288 PYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQG---RPYFKPTPFPG 416
P PP Y P+ GY P GAY PP G +P + P +PG
Sbjct: 63 PGAQYPPSGYPPSQGGYPP---GAY---PPSGYPQQPGYPPAGYPG 102
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 34.3 bits (75), Expect = 0.066
Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = +3
Query: 267 YEPIDNRPYIVNPPKDYNPNGNGYEPI---DNGAYYVDPPQGRPYFKPTPFPGARG 425
Y P + P V PP Y P +G P N + Y +PP GRP P P GA G
Sbjct: 394 YAPPQSYPPNVRPPSPYMPPPSGPAPPFYGQNQSMY-EPPVGRPNSGPPPSYGAGG 448
>02_04_0382 - 22501041-22501279,22501717-22501810
Length = 110
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +3
Query: 312 DYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFPGARGG 428
D P+ + Y+P + YY DPP Y+ P P P GG
Sbjct: 55 DPPPSPDYYDPPHSPDYY-DPPPSPDYYDPPPSPYYGGG 92
>06_03_0874 -
25580417-25580419,25580504-25580604,25580828-25581411,
25581523-25581594,25581667-25581793,25583412-25583516,
25583643-25583676
Length = 341
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = +3
Query: 285 RPYIVNP---PKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKP 401
+PY P P P G Y P G Y PP+G+P + P
Sbjct: 266 QPYPPKPQGQPYPPQPQGQPYPPQPYGQTYPPPPKGQPTYPP 307
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 29.5 bits (63), Expect = 1.9
Identities = 18/47 (38%), Positives = 21/47 (44%)
Frame = +3
Query: 273 PIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFP 413
P + P IV P Y P+ YEP Y +PP PY P FP
Sbjct: 636 PYPSPPDIVPSPPSYEPSPPSYEP-SPPEYAPEPPVYAPY-PPGIFP 680
>06_03_0486 -
21344680-21344805,21344922-21345115,21350027-21350185,
21350428-21350553,21350784-21350986,21351169-21351296,
21351631-21351741
Length = 348
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 84 LAMANAQDPVKVVENADSVLISNPDPGFSRPVIGQPGYVP 203
L M N + VE ++S +IS PGF + PG++P
Sbjct: 221 LKMKNPSINIVCVEPSESAVISGGSPGFHKIQGTGPGFIP 260
>08_02_1289 - 25923916-25924586,25925148-25926630
Length = 717
Score = 27.5 bits (58), Expect = 7.5
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = -1
Query: 539 ALQYVYLFIPLT*I---HMKF*NILLIHYFVINFLRYSLLPTASTRERGRLEV 390
ALQY+Y +P+ + H+K NILL F YSL+P + +L V
Sbjct: 519 ALQYLYDELPMLTVPHGHLKSSNILLNDRFEPLLTDYSLVPVMNQSHSAQLMV 571
>04_03_0904 + 20717005-20718087
Length = 360
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +3
Query: 300 NPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFP 413
NPP Y P Y+P PP +P KPTP P
Sbjct: 237 NPPPTYKPAPPTYKPQPKPN---PPPTYKPQPKPTPTP 271
>03_05_0937 -
28967038-28967245,28967348-28967556,28967584-28967644,
28967926-28968742,28968960-28971024
Length = 1119
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = +2
Query: 353 RCILRGPSPR-PTLLQAYPFPWCSRW 427
+ I+ PSP P + A F WCS W
Sbjct: 755 KAIIHNPSPLIPPIFGADEFGWCSEW 780
>09_02_0417 - 8915604-8916779,8916863-8917270
Length = 527
Score = 27.1 bits (57), Expect = 10.0
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +3
Query: 288 PYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTP 407
PY +N P P+ Y P Y PPQ PY P P
Sbjct: 42 PYAMNFPFPPFPH---YPPYTQNLQYAVPPQYAPYTLPPP 78
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,850,068
Number of Sequences: 37544
Number of extensions: 341431
Number of successful extensions: 879
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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