Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt9j22
(570 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10... 173 2e-44
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a... 170 1e-43
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S... 47 2e-06
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 30 0.21
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 29 0.36
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1... 28 0.84
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 28 1.1
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 27 1.9
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch... 27 2.6
SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb... 26 3.4
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual 26 4.5
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces... 26 4.5
SPBP8B7.12c |fta3|sma3|Sim4 and Mal2 associated |Schizosaccharom... 26 4.5
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 26 4.5
SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|ch... 25 5.9
SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 25 5.9
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone... 25 5.9
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 25 7.8
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 25 7.8
SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyce... 25 7.8
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c... 25 7.8
>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
L10a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 216
Score = 173 bits (420), Expect = 2e-44
Identities = 84/117 (71%), Positives = 97/117 (82%)
Frame = +3
Query: 180 KILAKKFDAFLASESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMK 359
K LAKK+DAF+ASE LIKQIPRLLGPGL+KAGKFP +SH + + KI EVK TIKFQ+K
Sbjct: 100 KKLAKKYDAFIASEVLIKQIPRLLGPGLSKAGKFPSPVSHSDDLYGKIIEVKSTIKFQLK 159
Query: 360 KVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 530
KVLCL VAVGHVDM ++LA N+ L+INFLVSLLKK WQN+ SL +KSTMG P RLY
Sbjct: 160 KVLCLGVAVGHVDMAEEQLAANLSLAINFLVSLLKKGWQNIGSLVIKSTMGKPYRLY 216
Score = 80.2 bits (189), Expect = 2e-16
Identities = 37/58 (63%), Positives = 45/58 (77%)
Frame = +1
Query: 22 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYWPK 195
SKVS + V +L+ S++KKRNF ETVELQIGLKNYDPQ+DKRFSGT+KL P+
Sbjct: 2 SKVSPANIRSSVETILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPR 59
>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
L10a|Schizosaccharomyces pombe|chr 3|||Manual
Length = 216
Score = 170 bits (414), Expect = 1e-43
Identities = 81/117 (69%), Positives = 97/117 (82%)
Frame = +3
Query: 180 KILAKKFDAFLASESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMK 359
K LAKK+DAF+ASE LIKQIPRLLGPGL+KAGKFP +SH + + KI EVK TIKFQ+K
Sbjct: 100 KKLAKKYDAFIASEVLIKQIPRLLGPGLSKAGKFPSPVSHADDLYGKITEVKSTIKFQLK 159
Query: 360 KVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 530
KVLCL VAVGHV+M+ ++L N+ L++NFLVSLLKK WQN+ SL +KSTMG P RLY
Sbjct: 160 KVLCLGVAVGHVEMSEEQLIANIMLAVNFLVSLLKKGWQNIGSLVVKSTMGKPHRLY 216
Score = 78.6 bits (185), Expect = 6e-16
Identities = 37/58 (63%), Positives = 46/58 (79%)
Frame = +1
Query: 22 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYWPK 195
SKVS ++ V +L+ S++KKRNF ETVELQIGLKNYDPQ+DKRFSGT+KL P+
Sbjct: 2 SKVSVASVRSNVEQILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPR 59
>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 373
Score = 46.8 bits (106), Expect = 2e-06
Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 5/112 (4%)
Frame = +3
Query: 186 LAKKFDAFLASESLIKQIPRLLGPGLNKAGKFPGLL----SHQESMTQKIDEVKGTIKFQ 353
L +FD FLA + +I +PR+LG + K P + E + +++ G F
Sbjct: 133 LRDQFDIFLADDRVIPMLPRILGKTFYQKSKVPVPVKISKGTAEQLKREVVSAYGATYFN 192
Query: 354 MKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVS-LLKKHWQNVRSLHMKST 506
+ GHV T ELA+NV + F+ ++ + + S+H+K++
Sbjct: 193 SAPCSSFMIKCGHVSNTSTELAENVESILQFVSKHIVPDGAKGIASIHLKTS 244
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 30.3 bits (65), Expect = 0.21
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Frame = +1
Query: 4 LTNKMSSKVSRDTLYE---CVNAVLQSSKDKKRNFLETVELQIGLKNYD-PQKDKRFSG 168
+T+K++ V ++ Y C N +++SS K NF +TV + +YD P+ D + G
Sbjct: 920 VTSKLNDLVIKEFTYPSSLCDNVLVRSSPSPKNNFDDTVFISYTSIDYDSPELDSVYEG 978
Score = 27.5 bits (58), Expect = 1.5
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Frame = +3
Query: 312 TQKIDEVKGTIKFQMKK----VLCLSVAVGHVDMTPDEL----AQNVHLSINFLVSLLKK 467
T++I+ GT+ V LS+A+G+++ P L N H+S+ L L+K
Sbjct: 2682 TERINNTDGTVVSSHNPFVFFVNVLSMAIGNINDAPVRLNALLMDNAHVSLRRLFELVKN 2741
Query: 468 HW 473
H+
Sbjct: 2742 HY 2743
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1811
Score = 29.5 bits (63), Expect = 0.36
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = +3
Query: 207 FLASESLIKQIPRLLGPGLNKA-GKFPGLLSHQESMTQKIDEVKGTI-KFQMKKVLCLSV 380
+LAS+ ++ R++G K F +++ S +DE++ + K + ++LC V
Sbjct: 1730 YLASQLVLHGFQRVIGDNPVKGVAAFQPVIAALVSYINSLDEIQFSRGKSEFYQLLCAIV 1789
Query: 381 AVGHVD 398
A GH+D
Sbjct: 1790 ACGHID 1795
>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 28.3 bits (60), Expect = 0.84
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = -3
Query: 412 SSGVMSTWPTATERHSTFFIWNLMVPLTSSIFC 314
S+G ++ T T R + F WN+++ +++FC
Sbjct: 236 STGYKGSYLTVTNRDAVFVGWNIVIGGFATVFC 268
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 27.9 bits (59), Expect = 1.1
Identities = 15/62 (24%), Positives = 29/62 (46%)
Frame = +1
Query: 34 RDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYWPKNLMLSW 213
++ L++ V SK+ + T+E Q+ N+D QK F +LK++ + W
Sbjct: 440 QNVLHDFVEGETSISKESLQQHKNTIENQLAAANWDCQKIDEFM-DAELKFYKECQTSQW 498
Query: 214 HQ 219
+
Sbjct: 499 EE 500
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 27.1 bits (57), Expect = 1.9
Identities = 10/34 (29%), Positives = 15/34 (44%)
Frame = +2
Query: 353 NEEGAVSFCSSWPCGHDS**ACSECASFHQLPCV 454
NE C W C D C++C ++ + CV
Sbjct: 257 NEPSNCKVCKKW-CAFDFSVQCADCKKYYHMDCV 289
>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 701
Score = 26.6 bits (56), Expect = 2.6
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 398 HDS**ACSECASFHQLPCVTAQETLAEC 481
H S + S ++HQL CV Q+ L+EC
Sbjct: 52 HPSINSLSSFQTYHQLLCVLEQKHLSEC 79
>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 3.4
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -3
Query: 472 QCFLSSDTRKLMERCTF*ASSSGVMSTWPTATERHST 362
+CF SD +KL +RC SS WP + +ST
Sbjct: 143 KCFHRSDVQKLSKRCDILFSSE-----WPEDVQENST 174
>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
Length = 426
Score = 25.8 bits (54), Expect = 4.5
Identities = 8/40 (20%), Positives = 22/40 (55%)
Frame = +1
Query: 367 CVFL*QLAMWT*LLMSLLRMCIFPSTSLCHCSRNTGRMSD 486
C FL ++ + + + +C+F T++ + +N R+++
Sbjct: 37 CTFLLSTILYLGIAVIMSHLCVFDDTAMLYLRQNRSRLAE 76
>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 693
Score = 25.8 bits (54), Expect = 4.5
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -2
Query: 332 DFINLLRHGLLVGEKTREFTSFVQTGTQQTGNLLDQ 225
D L RH L + + F + Q GT+ NL DQ
Sbjct: 424 DLFRLFRHSNLSTSREQIFQNLEQLGTRVIKNLTDQ 459
>SPBP8B7.12c |fta3|sma3|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 220
Score = 25.8 bits (54), Expect = 4.5
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +3
Query: 405 PDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY*FNTINFMT 557
P E +N H+ + ++L+ HW+ + SL M++ Q F+ +NFMT
Sbjct: 30 PSEEQRNEHVLKKWENNVLR-HWKILFSLFMQTCGDSVQGNAAFSILNFMT 79
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.8 bits (54), Expect = 4.5
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = -2
Query: 425 ILSKLIRSHVHMANCYRKTQHLLHLELNGSLD-FIN-LLRHGLLVGEKTREFTSFVQ 261
+L K++ + ++C+++ +HL+H+ L F N L+ L+ F FVQ
Sbjct: 1047 VLMKVVGVFANYSDCFQRNRHLVHMVLLCCTHVFYNQTLKPATLIDSALDVFLCFVQ 1103
>SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 25.4 bits (53), Expect = 5.9
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 260 FEQSW*I-PWSSLPPGVHDAED**SQGNH*VPNEEGAV 370
F + W I P+ SLP G H +E PN+EG V
Sbjct: 36 FPKEWSILPFLSLPDGAHSSEKDFVYFTLPFPNDEGTV 73
>SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 288
Score = 25.4 bits (53), Expect = 5.9
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +1
Query: 13 KMSSKVSRDTLYECVNAVLQSSKDKKRNFLETV 111
K K DT+ E A LQSS DK NF +T+
Sbjct: 215 KRPDKSPFDTMTE---ATLQSSSDKSENFTKTL 244
>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 809
Score = 25.4 bits (53), Expect = 5.9
Identities = 9/19 (47%), Positives = 16/19 (84%)
Frame = +1
Query: 55 VNAVLQSSKDKKRNFLETV 111
+NA+L+ SK+KK N +E++
Sbjct: 370 INALLERSKEKKANVIESL 388
>SPAC19A8.08 |upf2||nonsense-mediated decay protein
Upf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1049
Score = 25.0 bits (52), Expect = 7.8
Identities = 11/34 (32%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Frame = +3
Query: 156 AFLRHCKAKILAKKFDAF---LASESLIKQIPRL 248
AF++ CK+ + ++ +D+F + + SL K IP +
Sbjct: 46 AFMKRCKSSLTSENYDSFIKEIKTLSLKKFIPEI 79
>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1369
Score = 25.0 bits (52), Expect = 7.8
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = -1
Query: 165 GETLVLLWVIVLQTNLKLYSLQKVTFLVLRGLKN 64
G L LW IV+ T L + F VLR L N
Sbjct: 1184 GSKLTKLWKIVVMTVSFLVGAWLIIFYVLRKLSN 1217
>SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 25.0 bits (52), Expect = 7.8
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -3
Query: 238 ICLISDSDARKASNFLASILALQCRRNACPSVGHSSSDQFEALQSPKS 95
+ L S+SD ++ L + L + C V H S D+ LQ+ KS
Sbjct: 274 LALTSESDKNSSAKKLGEFIVLNQKLLECLGVSHYSIDR--VLQATKS 319
>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1111
Score = 25.0 bits (52), Expect = 7.8
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +1
Query: 223 H*SSRFPVCWVPV*TKLVNSLVFSPTRS 306
H S RFP PV T L NSL++ T S
Sbjct: 903 HVSGRFPQVSSPVNTALSNSLLYIRTLS 930
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,475,622
Number of Sequences: 5004
Number of extensions: 52564
Number of successful extensions: 183
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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