Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt9j22
(570 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ270980-1|CAB65902.1| 186|Caenorhabditis elegans 60s ribosomal... 187 4e-48
AC024200-5|AAK66025.1| 155|Caenorhabditis elegans Ribosomal pro... 187 4e-48
AC024200-4|AAF36008.1| 216|Caenorhabditis elegans Ribosomal pro... 187 4e-48
Z77663-10|CAB01204.1| 543|Caenorhabditis elegans Hypothetical p... 48 5e-06
Z81576-2|CAB04644.1| 522|Caenorhabditis elegans Hypothetical pr... 31 0.44
AF067949-5|AAC19234.1| 109|Caenorhabditis elegans Synaptobrevin... 30 1.0
AF003282-1|AAB61235.1| 109|Caenorhabditis elegans SNB-1 protein. 30 1.0
AF003281-1|AAB61234.1| 109|Caenorhabditis elegans SNB-1 protein. 30 1.0
Z70206-1|CAA94124.1| 407|Caenorhabditis elegans Hypothetical pr... 29 2.4
AF099915-5|AAC68770.1| 118|Caenorhabditis elegans Hypothetical ... 28 4.1
AF038613-11|AAB92054.2| 836|Caenorhabditis elegans Mammalian el... 28 4.1
U00047-4|AAA50690.1| 825|Caenorhabditis elegans Hypothetical pr... 27 7.2
AL021497-2|CAA16400.1| 606|Caenorhabditis elegans Hypothetical ... 27 9.5
>AJ270980-1|CAB65902.1| 186|Caenorhabditis elegans 60s ribosomal
protein L10A protein.
Length = 186
Score = 187 bits (456), Expect = 4e-48
Identities = 86/117 (73%), Positives = 103/117 (88%)
Frame = +3
Query: 180 KILAKKFDAFLASESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMK 359
K LAK +DAF+ASESLIKQIPR+LGPGLNKAGKFP +++H ES+ K DE++ T+KFQMK
Sbjct: 70 KKLAKSYDAFIASESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMK 129
Query: 360 KVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 530
KVLCLSVAVGHV +T +EL N+ LSINFLVSLLKK+WQNVRSL++KSTMG PQR+Y
Sbjct: 130 KVLCLSVAVGHVGLTQEELVSNISLSINFLVSLLKKNWQNVRSLNIKSTMGKPQRVY 186
Score = 42.7 bits (96), Expect = 2e-04
Identities = 16/22 (72%), Positives = 21/22 (95%)
Frame = +1
Query: 130 KNYDPQKDKRFSGTVKLKYWPK 195
KNYDPQKDKRFSG+++LK+ P+
Sbjct: 8 KNYDPQKDKRFSGSIRLKHIPR 29
>AC024200-5|AAK66025.1| 155|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 1, isoform b protein.
Length = 155
Score = 187 bits (456), Expect = 4e-48
Identities = 86/117 (73%), Positives = 103/117 (88%)
Frame = +3
Query: 180 KILAKKFDAFLASESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMK 359
K LAK +DAF+ASESLIKQIPR+LGPGLNKAGKFP +++H ES+ K DE++ T+KFQMK
Sbjct: 39 KKLAKSYDAFIASESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMK 98
Query: 360 KVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 530
KVLCLSVAVGHV +T +EL N+ LSINFLVSLLKK+WQNVRSL++KSTMG PQR+Y
Sbjct: 99 KVLCLSVAVGHVGLTQEELVSNISLSINFLVSLLKKNWQNVRSLNIKSTMGKPQRVY 155
>AC024200-4|AAF36008.1| 216|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 1, isoform a protein.
Length = 216
Score = 187 bits (456), Expect = 4e-48
Identities = 86/117 (73%), Positives = 103/117 (88%)
Frame = +3
Query: 180 KILAKKFDAFLASESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMK 359
K LAK +DAF+ASESLIKQIPR+LGPGLNKAGKFP +++H ES+ K DE++ T+KFQMK
Sbjct: 100 KKLAKSYDAFIASESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMK 159
Query: 360 KVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 530
KVLCLSVAVGHV +T +EL N+ LSINFLVSLLKK+WQNVRSL++KSTMG PQR+Y
Sbjct: 160 KVLCLSVAVGHVGLTQEELVSNISLSINFLVSLLKKNWQNVRSLNIKSTMGKPQRVY 216
Score = 83.4 bits (197), Expect = 1e-16
Identities = 37/58 (63%), Positives = 48/58 (82%)
Frame = +1
Query: 22 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYWPK 195
SKVSR++L E + VL+ S +K R F ET+ELQIGLKNYDPQKDKRFSG+++LK+ P+
Sbjct: 2 SKVSRESLNEAIAEVLKGSSEKPRKFRETIELQIGLKNYDPQKDKRFSGSIRLKHIPR 59
>Z77663-10|CAB01204.1| 543|Caenorhabditis elegans Hypothetical
protein F53F4.11 protein.
Length = 543
Score = 48.0 bits (109), Expect = 5e-06
Identities = 26/112 (23%), Positives = 56/112 (50%), Gaps = 1/112 (0%)
Frame = +3
Query: 186 LAKKFDAFLASESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKV 365
LA +D FL+ + + LG +A K P +Q+ ++ I+ T+ + +++
Sbjct: 300 LASTYDVFLSDGRVYNSVKSFLGKEFYRAHKCPLPFVYQKPISTAIENALRTVVYPLRRY 359
Query: 366 LCLS-VAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPP 518
+ S V VGH+ + +L +N+ + + S + N+RS+++ ++ G P
Sbjct: 360 MVRSCVNVGHLGQSSADLKENIDTVLEKIASKCPGGFANIRSIYLGASDGKP 411
>Z81576-2|CAB04644.1| 522|Caenorhabditis elegans Hypothetical
protein R10E8.3 protein.
Length = 522
Score = 31.5 bits (68), Expect = 0.44
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = -2
Query: 440 DGKMHILSKLIRSHVHMANCYRKTQHLLHLELNGS--LDFINLLRHGLLVGEKTREFTSF 267
D + + L K+ + + + +R + HLEL GS L+FI LL L +K R+ T F
Sbjct: 329 DFERYTLEKMQNLGIFLGS-FRNKISMAHLELKGSSELEFIQLL--DCLDAKKLRKLTIF 385
Query: 266 VQTGTQQTGN 237
G GN
Sbjct: 386 ATVGDVNNGN 395
>AF067949-5|AAC19234.1| 109|Caenorhabditis elegans Synaptobrevin
related protein 1 protein.
Length = 109
Score = 30.3 bits (65), Expect = 1.0
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +3
Query: 258 GLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLS 437
G ++ G P Q++ Q +DEV G +K ++KVL + +D D L +
Sbjct: 11 GGSQGGPRPSNKRLQQTQAQ-VDEVVGIMKVNVEKVLERDQKLSQLDDRADALQEGASQF 69
Query: 438 INFLVSLLKKH-WQNVRSL 491
+L +K+ W+N++ +
Sbjct: 70 EKSAATLKRKYWWKNIKMM 88
>AF003282-1|AAB61235.1| 109|Caenorhabditis elegans SNB-1 protein.
Length = 109
Score = 30.3 bits (65), Expect = 1.0
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +3
Query: 258 GLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLS 437
G ++ G P Q++ Q +DEV G +K ++KVL + +D D L +
Sbjct: 11 GGSQGGPRPSNKRLQQTQAQ-VDEVVGIMKVNVEKVLERDQKLSQLDDRADALQEGASQF 69
Query: 438 INFLVSLLKKH-WQNVRSL 491
+L +K+ W+N++ +
Sbjct: 70 EKSAATLKRKYWWKNIKMM 88
>AF003281-1|AAB61234.1| 109|Caenorhabditis elegans SNB-1 protein.
Length = 109
Score = 30.3 bits (65), Expect = 1.0
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +3
Query: 258 GLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLS 437
G ++ G P Q++ Q +DEV G +K ++KVL + +D D L +
Sbjct: 11 GGSQGGPRPSNKRLQQTQAQ-VDEVVGIMKVNVEKVLERDQKLSQLDDRADALQEGASQF 69
Query: 438 INFLVSLLKKH-WQNVRSL 491
+L +K+ W+N++ +
Sbjct: 70 EKSAATLKRKYWWKNIKMM 88
>Z70206-1|CAA94124.1| 407|Caenorhabditis elegans Hypothetical
protein C49F8.1 protein.
Length = 407
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +3
Query: 375 SVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPP 518
SV + H+ ++P+ L Q L+ F + W+ +R MKS +G P
Sbjct: 349 SVTIDHLRISPESLVQIARLAQAFGTN---PDWKKLRLADMKSALGTP 393
>AF099915-5|AAC68770.1| 118|Caenorhabditis elegans Hypothetical
protein E02H9.4 protein.
Length = 118
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 79 KDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKY 186
K +K N E VEL +KNY P+ + R V+ KY
Sbjct: 41 KGEKYNGNEKVELTTTVKNYKPKNNTRKWPAVEAKY 76
>AF038613-11|AAB92054.2| 836|Caenorhabditis elegans Mammalian
elks/cast/erc/rab6 interactingprotein homolog protein 1
protein.
Length = 836
Score = 28.3 bits (60), Expect = 4.1
Identities = 20/69 (28%), Positives = 33/69 (47%)
Frame = +3
Query: 141 PTEGQAFLRHCKAKILAKKFDAFLASESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQK 320
PT+ AF +H + D L I +IP G GLN A ++ L ++M +K
Sbjct: 115 PTQN-AFWQHNNSMATTSVQDYDLMQPG-ISRIPTGTGSGLNIAREYEQLKVEYDTMMEK 172
Query: 321 IDEVKGTIK 347
+++ +IK
Sbjct: 173 LNQTMNSIK 181
>U00047-4|AAA50690.1| 825|Caenorhabditis elegans Hypothetical
protein ZK418.6 protein.
Length = 825
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/50 (22%), Positives = 27/50 (54%)
Frame = +1
Query: 61 AVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYWPKNLMLS 210
++ + SK++ + E E ++ + PQK ++ +++ W K+ +LS
Sbjct: 369 SIFRKSKERTTSITEVSEDHSEVEKFKPQKRRKNERPPRIRRWGKDRLLS 418
>AL021497-2|CAA16400.1| 606|Caenorhabditis elegans Hypothetical
protein Y51A2D.4 protein.
Length = 606
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = -1
Query: 228 SVTLMPGKHQIFWPVF*LYSAGETLVLLWVIVLQTNLKLYSLQKVTFLVL 79
S+T + GK+ FW LY+ + ++++ L K YS+++V L +
Sbjct: 523 SLTQVIGKYGAFW----LYAGLTVIAFIFILFLVPETKGYSIEEVEMLFM 568
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,898,678
Number of Sequences: 27780
Number of extensions: 307922
Number of successful extensions: 832
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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